Sol Genomics Network

Unigene SGN-U283098

Unigene Basic Information

Unigene ID:	SGN-U283098
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	283098
mRNA sequence:	Length: 674 bp

>SGN-U283098 Solanum tuberosum #4 (2 members)
TAAGGACGAGGATAATCACTAGAGCATTCTGCAATTTGACCCATAAACCAAAGTTGCAGGTTCTCGGAAATGGGTCTTCTGATGTGATTC
GGGCTGACCCGACTGGAAGTCCGGTGTCGAATTTGAGGTCTTCATTTTCGACGGCGGCCGCTGCTGTGGAAGCGCCGGCGTCGGCGTCAG
TTGAGAGGCTATTTGGGTTAGTGAAAGAGTATGAAGATTATAGAAGGGGTTTGTATGGTGGGCTTACACATAAAGCCCTTCTTGTTGATG
CTGTGGGTACTCTTGTTATTCCTTCTCAACCAATGGCTCAGATTTACAAGCAAATTGGTGAGAAGTACGGGGTGGAGTATTCTGAAGATG
AGATATTGAAACGATATAGATGGGCTTACGGGCAGCCTTGGGGTAGATCTAGGCTCAGATATGTCAACGATGGACGACCATTTTGGCAAC
ATATAGTTAGTTGTTCGACTGGCTGTTCTGACTCTCAGTACTTTGAGGAGCTGTATAACTATTATACGACTGAAAAGGCTTGGCATCTTT
GTGATCCAGAAGCCGAAAGGGTCTTCCAGGCCCTTAGAGCAGCGGGAGTAAAGTTGGCTATAGTGTCGAACTTTGACACCCGGGTTGAGA
CCAGTGTTGAGGGCTCTGAACTGTGATCACTGGTTTGATGCCGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1042	HAD-SF-IIIA Hydrolase HAD_SF_A_v1 PGP_bact HAD_II	18
2	23355	Hlgnase/hydrlase HAD-SF-IIIA AHBA_synth_like Hydrolase HAD-SF-IA-v3 HAD_SF_A_v1 PGP_bact HAD_II	13
5	57452	Hlgnase/hydrlase HAD-SF-IIIA AHBA_synth_like Hydrolase HAD-SF-IA-v3 HAD_SF_A_v1 PGP_bact HAD_II	13
1.1	102477	HAD-superfamily hydrolase subfamily IA variant 1 - Biological Process: metabolism (GO:0008152) - Molecular Function: phosphoglycolate phosphatase activity (GO:0008967) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) HAD-superfamily subfamily IA hydrolase REG-2-like	13
2	120091	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Haloacid dehalogenase/epoxide hydrolase - Biological Process: metabolism (GO:0008152) - Molecular Function: hydrolase activity (GO:0016787) HAD-superfamily subfamily IA hydrolase REG-2-like HAD-superfamily hydrolase subfamily IA variant 1 - Biological Process: metabolism (GO:0008152) - Molecular Function: phosphoglycolate phosphatase activity (GO:0008967)	10
5	130367	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Haloacid dehalogenase/epoxide hydrolase - Biological Process: metabolism (GO:0008152) - Molecular Function: hydrolase activity (GO:0016787) HAD-superfamily subfamily IA hydrolase REG-2-like HAD-superfamily hydrolase subfamily IA variant 1 - Biological Process: metabolism (GO:0008152) - Molecular Function: phosphoglycolate phosphatase activity (GO:0008967)	10

Preceding Unigenes (1)

Unigene	Build
SGN-U262253	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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