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Unigene SGN-U287381

Unigene Basic Information

Unigene ID:	SGN-U287381
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	287381
mRNA sequence:	Length: 280 bp

>SGN-U287381 Solanum tuberosum #4 (1 members)
GGAAGCCAGACTGTTGATGGTGATGGACAAATCAACAATGAGGAGTTTGTTAAGGTCATTGATGGCCAAGTAATTCCCACCATTCCCTTC
TTGTTACATTTGAAGTTTAGACTTGTCAAAAATGTGAAAAAAAGCCAAAAATAATTCATTGGATAGGATCTTGTCTAGTTAATGTAAGTC
TTACCATCTCGATGTATTTGAACCTTGATNAATGTAATGTTTTATTGAATGGTGGTGAATCTCTACTTATTTCTTGAATTTATGACTTTC
TTTGATCCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
calmodulin	calmodulin

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E406851
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P97691 (56 Aa)

GSQTVDGDGQINNEEFVKVIDGQVIPTIPFLLHLKFRLVKNGKKAKNNSLDRILSS

SignalP predicts non-secretion with a score of 0.051

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P229425 (55 Aa)

TRSYPMNYFWLFFTFLTSLNFKCNKKGMVGITWPSMTLTNSSLLICPSPSTVWLP

SignalP predicts secretion with a score of 0.522

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	# Members
1.2	18486	1
2	50078	1
5	91666	1

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U245146	Solanum tuberosum #3

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