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Unigene SGN-U289610

Unigene Basic Information

Unigene ID:	SGN-U289610
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289610
mRNA sequence:	Length: 321 bp

>SGN-U289610 Solanum tuberosum #4 (1 members)
CGACGATGCCGGAAAATATAGGATCGGATGTACAGCACCGCCGGACGGGAAGGTGGCGCCGCCGGGTTATTACATGGTATTTGCTGTAAA
CCAAGGAGTGCCAAGTGTGGCGCGATGGGTCCAGCTGGTTGTTTGAAACTTTTTTATATTTTCAATTTTTATTTAATTTTATTTAGTTTT
TATACAAATAGGAGTATATTTTAGACTCTTTAAAGTCTGAATGAGACTACAAGAGTCTATTATTTTATTTTATCCTTTCAAATAAATTGG
AAAGATAATATAAGTATATAAAGCACAAGTACTTTACAGTTTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224138898\|ref\|XP_002322929.1\|	79	2e-13	79.07	129 bp (40.2%)	3
Description:	predicted protein [Populus trichocarpa] >gi222867559\|gb\|EEF04690.1\| predicted protein [Populus …
arabidopsis	blastx	At3G53950.1	77	2e-15	72.09	129 bp (40.2%)	3
Description:	glyoxal oxidase-related \| chr3:19986682-19988319 FORWARD
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P99826 (44 Aa)

DDAGKYRIGCTAPPDGKVAPPGYYMVFAVNQGVPSVARWVQLVV

SignalP predicts non-secretion with a score of 0.05

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P231723 (60 Aa)

DRMYSTAGREGGAAGLLHGICCKPRSAKCGAMGPAGCLKLFYIFNFYLILFSFYTNRSIF

SignalP predicts non-secretion with a score of 0.155

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	544	F_box_assoc_1	33
2	22811	Ribosomal_S18 PLD Kelch_rep F_box_assoc_1	19
5	57183	Ribosomal_S18 PLD Kelch_rep F_box_assoc_1	16
1.1	101371	F-box associated type 1	575
2	119296	Galactose oxidase central Glyoxal oxidase N-terminal	17
5	129864	Galactose oxidase central Glyoxal oxidase N-terminal	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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