Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564020 in the current build, Tomato 200607 #2

Unigene SGN-U312306

Unigene Basic Information

Unigene ID:	SGN-U312306
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312306
mRNA sequence:	Length: 1606 bp

>SGN-U312306 Tomato 200607 #1 (40 members)
AGATTTACTCATTTTAATTTCTGCATATTTTGTTGAGATTTGAGTTTGAAAATGCGTGAAATCCTTCATATTCAAGGTGGACAATGCGGT
AACCAAATTGGTGCCAAGTTTTGGGAAGTTGTTTGTGCGGAACACGGCATTGATTCTACCGGACGTTACAGCGGTGATTCTGATCTCCAG
CTTGAGAGAATTAATGTCTATTACAATGAGGCTACCTGTGGAAGGTTTGTTCCTAGGGCTGTTCTTATGGATCTGGAGCCTGGTACCATG
GACAGTATTAGATCTGGTCCTTATGGACAGATCTTCCGTCCTGATAACTTTGTTTTTGGACAATCTGGTGCTGGTAACAATTGGGCCAAG
GGACATTACACCGAAGGTGCTGAATTGATTGATGCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTGACTGCCTTCAAGGATTT
CAAGTGTGCCATTCATTGGGTGGAGGAACGGGATCTGGTATGGGTACGCTTTTGATCTCAAAGATCAGAGAAGAATACCCAGACAGAATG
ATGCTTACCTTCTCCGTTTTCCCTTCACCTAAGGTTTCTGATACTGTTGTTGAGCCTTATAATGCTACCTTGTCTGTGCATCAATTGGTT
GAAAATGCTGATGAGTGCATGGTTCTCGACAACGAGGCTCTATACGATATCTGCTTCAGAACCCTAAAGCTTACCACCCCAAGCTTTGGA
GATCTAAATCATCTGATATCAGCTACAATGTCTGGTGTCACCTGTTGCTTGCGTTTCCCTGGACAGTTGAACTCTGATCTTAGGAAGTTA
GCTGTGAATCTGATTCCATTCCCTAGGCTCCATTTCTTCATGGTTGGTTTTGCACCACTGACTTCACGTGGTTCTCAGCAATACAGGGCT
TTGACAGTGCCAGAGCTTACACAGCAAATGTGGGATGCCAAGAACATGATGTGCGCAGCTGACCCACGTCATGGAAGATACTTGACTGCC
TCTGCTATGTTCAGGGGTAAGATGAGCACGAAAGAAGTGGATGAACAGATGCTCAATGTGCAAAACAAGAACTCTTCCTACTTTGTTGAA
TGGATTCCAAACAATGTCAAGTCAACTGTTTGTGATATCCCACCAACCGGGCTTAAAATGGCATCTACCTTCATTGGGAACTCAACATCT
ATTCAAGAGATGTTTAGGCGTGTGAGCGAGCAGTTCACTGCTATGTTTAGGAGAAAAGCTTTCTTGCATTGGTACACTGGGGAAGGAATG
GACGAGATGGAGTTCACTGAGGCAGAGAGTAACATGAATGATCTGGTATCTGAATATCAGCAGTACCAGGACGCCACTGCTGATGATGAG
GGAGAATATTACGAGGAGGAAGATGAAGAGGATGTCAATGAGAATTAAACCCCAACTTCCTGTTGATGTTCTTTCGGCAATTGCAATGTA
ATGTAATGCGTCTTGATAGCGAGTGCTATCCTGTAATATTTTTTGTTGTTGTTACTTAATTATTCTGGTGTTTTGTGACTATTAAGTTTC
TATTGCTATTTAGAGTAGGCTCTCTGTATTGCCTTTTACTACTAGTATTATTTTGTTCTATTTCAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	15
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (40)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Expression Data (15)

Annotations (manual: 1 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	128984	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	81

Preceding Unigenes (1)

Unigene	Build
SGN-U212618	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer