Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578104 and SGN-U581349 in the current build, Tomato 200607 #2

Unigene SGN-U312392

Unigene Basic Information

Unigene ID:	SGN-U312392
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312392
mRNA sequence:	Length: 2539 bp

>SGN-U312392 Tomato 200607 #1 (42 members)
GAGGTAGAAATGGATAGAAAAAATCCCTTTGAAAATGAGTACTATATGAGAGGCCCTATTTTTTTGCTGCCAAGGATATAATACTGTTAA
CTCCTCCTCTTCTCACTTCTTCCCCAATTTCTTTCAAATCCCAATCCTCACTCTTATCCTTCTCCGCCATGGCTTCAATTTCAGCAGCGG
CTGCCACCGCCACTTCTTCTCCTAAGCTCCTAAACCCTTCTAATCCCCTTCTTCCTTCCGCTGCTAAACCATCTAAGCTTATCCTATCCT
CTTCATTTACCCCCAACTTTTCTACCCTTCTCCTCCACTCACCCGCCGCTACTTCTCCCACTACCCACCACCAACGCCGCTTCACTGTCC
GTGCTGCCCGTGGCAAATTCGAGAGGAAGAAACCCCATGTCAATATTGGCACTATTGGTCATGTTGACCATGGAAAGACTACCCTTACTG
CTGCTTTAACCATGGCTCTTGCTTCTATGGGTAATTCCGCTCCCAAGAAGTATGATGAAATTGATGCCGCCCCAGAAGAGCGTGCTCGTG
GGATTACTATTAATACGGCTACGGTTGAGTATGAGACTGAGAACCGACACTATGCCCACGTGGACTGCCCCGGTCACGCTGATTATGTCA
AGAACATGATTACTGGTGCTGCCCAGATGGATGGAGCTATTCTTGTTGTTTCCGGTGCTGATGGCCCAATGCCACAGACCAAAGAACATA
TCTTGCTTGCTAAACAAGTGGGTGTTCCTAATATGGTGGTGTTTTTGAACAAACAAGATCAGGTTGATGATGAAGAGCTTCTTGAGCTTG
TTGAGTTGGAGGTAAGAGAGCTTTTGTCTAGTTATGAGTTCCCTGGTGATGATATTCCTATTGTTTCTGGCTCTGCTCTTTTGGCTTTAG
AGGCTTTAATGGCAAATCCTAGTATTAAGAGAGGTGAAAATGAATGGGTTGATAAGATTTTTACATTAATGGACAATGTTGATAGTTATA
TTCCTATTCCGCAAAGACAAACTGAGTTGCCTTTTTTGATGGCTATTGAAGATGTGTTTTCAATCACTGGTAGAGGTACAGTGGCAACAG
GGAGAGTAGAGAGAGGGACTGTTAGGGTTGGAGAGACCGTTGATATTGTAGGATTAAGAGACACCAGGTCTACTACCGTGACCGGGGTTG
AAATGTTTCAGAAGATTTTGGATGAAGCAATGGCTGGTGATAATGTGGGATTGTTGTTGAGAGGTATTCAGAAGATTGATATTCAAAGAG
GAATGGTGTTGGCGAAACCGGGAACAATCACTCCTCACACCAAGTTTGAAGCTCTTGTGTATGTTCTGAAAAAGGAGGAGGGTGGCAGGC
ATTCCCCATTCTTTTCGGGGTATAGGCCTCAGTTTTACATGAGGACCACCGATGTAACTGGGAAGGTTACTTCCATTACCACTGACAAAG
GGGATGAATCTAAGATGGTCATGCCTGGTGATCGTGTGAACTTGGTGGTTGAGCTCATTATGCCTGTCGCTTGTGAACAAGGGATGAGAT
TTGCCATCAGGGAAGGAGGAAAGACTGTTGGAGCTGGTGTCATTCAGAAAATTCTTGAGTGATCAACGAGCAGCAGCGCATTTCCATTCA
AAATGGTCCGGTCCTTGTCATGCAATATTTTTAATCCCTTGTCATATATGCAACGTTTTGGTTACTTCTTTTCTTTTAGATCATAGGTTA
GTTGGAGAAATCTTGTTATAAGTCAATGCTAGTGCACCTTTGCGAGTTTGCTTCAATTTTTGTTTGTTTGTTTGAAAAGAAGAACATTTT
GTATCTTGTGTATGTTTAGTTTCCATCAGGAAAAATCATACTTTTGATTGAAACTCAACTTAAACATGCCAATGAAAAAAAATGCATTTG
ATAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACGAGGTACATAATTTCTTCTCACCAAAGCAAAAACTTTCACATTTTTTTCTCC
ACATTTCATCATGTCTCAGACAGTTGTTCTCAAGGTTGGCATGTCATGCCAAGGTTGTGTTGGAGCTGTCAACAGAGTTTTGGGTAAAAT
GGAAGGTGTTGAATCATTTGACATCGATATAAAGGAGCAAAAAGTGACGGTAAAAGGAAATGTGGAACCGGAAGCTGTTTTCCAAACGGT
TTCAAAGACCGGAAAGAAGACATCGTATTGGGAAGAACCAGCACCAGCATCAGCACCAGAACTCGAAACAAAGCCCGTGGAAGAAAAGCC
CGTAGAAGAAAAGCCCACAGAAACACCAGCTGAGCCCGAACCAAAGCCCACAGAAGAAAAGCCTGCAGAAACTGTTGCTTAATTAATGGG
CTGAAATTTATAGCATATGATTGTGGTTTATCATTCAAGTTTTCTTGTACAACTAAAGCCAAAATGTGATCTTAGCTGAAATAATTGTCT
TGTTTGGTTTTCTTATAATGTTTGATGTCAAATCATGTATCTTGTATTAATATATTTGTGGATGTTTGGATCAAAAAAAAAAAAACAATT
CGAAAATAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	8
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (42)

Alignment image suppressed for unigene with 42 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	129491	Translation elongation factor GTP-binding - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Translation elongation factor Tu - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U212723	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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