Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580605 and SGN-U581627 in the current build, Tomato 200607 #2

Unigene SGN-U312633

Unigene Basic Information

Unigene ID:	SGN-U312633
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312633
mRNA sequence:	Length: 1597 bp

>SGN-U312633 Tomato 200607 #1 (57 members)
TAAAATGTGATGTGGTAATTTTTATTTTTTATATAATGAAAAGGAATAAGTAAAAAAGATGAGGAAGTAGCTTTGAGGATCATTCATATC
TTGCCCATTGGTTCTTTGGCTTGTCTCTCTCAATACAATCACAGCTTCACAACACTGCAAAGTGAGAAAAGGATGAGATAAAATTGAAGT
AAATTTCTAAGGCTCAGCTTTCATCAACAAAGACAAACAAGGCCCATAATTTTATACCTTTTTACGTATATTATAAAGAGGACACCTTCC
ATTATAATGGCGGATACTACTAGAAGAACAATCAACACTATTGCTTCTTCTTCTCTTAAAATTTGCGTCTTTTCTTATCTTTCCATTTCC
GTGATTCTCTTTGGTTACTTCCTTTACTAGTATACTATTTCACTAAGTGAAAAAGACGCAAACTTTTTTTCCTTTTATACAGCTTTTGTT
CAATTTTTCAATATTCTTGAACTGATATGGCTGTGGCTATGGCTTCTTGTGGGAGCATTTCTGGGGTTTATACTAATTTAAATGCAATTG
AGAAAATACCCATTTCAAGTTCAGTTCTCTTCAGAGGTTCTTTTGGTTTGGATCCTGTACAGAGAATATGCCTTGTTCCCAAGAGATTAG
CTTTTTCTGAGAGTACAATTATTCCAAAAGCATCTTCAACTGCAGCTGTTGAGGGTGGAAGTTCCCAAGATACTGCTGTCCCAACGCCCA
AAGTCATAATAGATTTGGATTCGGATCCAGAAACAACTGTAGTGGAGGTTACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACAATGA
CTGCACTAAAAAATCTTGGACTGAATGTTGTCAAGGCTAATGTCTATCTAGATTCATCAGGGAAGCACAATAAATTATGCATCACACATG
CTTCTACAGGTAGAAAGGTTGAGGATCCAGAGCTGCTAGAAGCAATTCGATTGACAATTATCAACAATTTGATGGAGTTTCATCCGGAAT
CTAGCTCTCAGTTAGCTATGGGTGAAGCCTTTGGTGCTTTTCAACCAAGTCAAAAGCTAGATGTGGACATAGCAACTCATATCCATGTCT
ATGATGATGGTCCTGAACGAAGCTTACTGTGTGTAGAGGCAGCAGATCGACCTGGATTAATAGTTGATCTCGTCAAGATCATTACTGAAA
TAAACATTGATGTTATATCAGGAGAATTTGACACCGAGGGACTGCTAGCTAAGGCAAAATTTCATGTAAGCTACAAGAACAAAGCTCTCA
TCAAACCCCTTCAACAGGTTCTTGCAAACAGCTTGCGCTATTACTTGAGGAGACCAACAACAAACGAGTCAAGCTTCTAATTCATCGCAG
CATGAGAGATAAGACAATCAGTTGGCTTAACAATGCACTTTTTAACTGTCACTACAAAACGTATGTTGAAACATGCATGAAAAAATCTAG
AAAAAAAAAATTATAATTTCATTACTGCTCTAACATTGTAAAATGCTACCATCTATACAATCATCGTCTTTGAATAAACATTTCCAAATT
GGTAAGAGGCATTGATATATACAACTCAGTATCAGTTAAGGCTTATGAATCATCAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (57)

Alignment image suppressed for unigene with 57 aligned sequences.
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Markers Information (0)

Expression Data (9)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101590	Amino acid-binding ACT - Biological Process: metabolism (GO:0008152) - Molecular Function: amino acid binding (GO:0016597)	66
2	119300	Amino acid-binding ACT - Biological Process: metabolism (GO:0008152) - Molecular Function: amino acid binding (GO:0016597)	17
5	129709	Amino acid-binding ACT - Biological Process: metabolism (GO:0008152) - Molecular Function: amino acid binding (GO:0016597)	16

Preceding Unigenes (2)

Unigene	Build
SGN-U213763	Lycopersicon Combined #3
SGN-U213764	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
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