Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579543 in the current build, Tomato 200607 #2

Unigene SGN-U312844

Unigene Basic Information

Unigene ID:	SGN-U312844
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312844
mRNA sequence:	Length: 3157 bp

>SGN-U312844 Tomato 200607 #1 (73 members)
CCGTTCTCACAATATTCGTTCCAAAACCATACAAAGAACCATCAAAATCTAATTAGAAATCTCTTTTTTCTTCTTCCAAATTCCCTCATT
CATAATTTTATTTTAAAAAAATCAATGGCGGCATCTGTGGAAAACAGACAGTATACTCACCTTGAACCGGGTTTATCAGGCGTAGGCCGT
ACTTTCAAGCCTAGGCCTGATTCCCCGGTTCGTGGTTGCAACTTCCCTCCTTCATCCAACCATGAACTCCCTTTCCAAAAAAAACAAAAT
CCCCCAATTTACCTTGATTATTCGTCTAGTGAAGACGAGGATGACGATGACGAAAAAAATGAATACGTTCAAATGATCAAAAAAGGTAAA
ACTGAATTAGAACCATCAATTCATGATACTAGAGATGAAGGTACCGCTGATAATTGGATCGAACGAAACTTTTCCTTAATACGTCTCACC
GGTAAACACCCATTCAACTCCGAACCACCTTTATCTCGCCTTATGCATCACGGGTTCATCACTCCCGTACCACTTCATTACGTCCGTAAC
CACGGCCCAGTCCCCAAAGCATCCTGGTCTGACTGGACTGTGGAAGTTACAGGGCTGGTAAAACGACCAATGAAATTCACAATGGATCAA
TTAGTTAACGAATTCCCTTCACGTGAATTGCCTGTCACACTTGTGTGCGCAGGCAATCGTCGTAAAGAGCAGAATATGGTGAAGCAGACA
ATTGGTTTCAATTGGGGTGCTGCTGCCGTTTCAACCACCGTATGGCGCGGAGTACCTCTCCGCGCCCTGTTGAAACGGTGCGGTGTTCAG
AGTAAGAAAAAAGGCGCGCTTAATGTCTGTTTCGAAGGTTCCGATGTTTTGCCTGGAGGTGGTGGTTCAAAGTACGGAACGAGTATAAAG
AAGGAATTCGCCATGGATCCATCTCGTGATATTATTGTAGCTTACATGCAAAACGGAGAAATGTTGTCACCGGATCATGGTTTTCCGGTA
AGGATGATTATCCCCGGATTCATCGGTGGAAGAATGGTGAAATGGTTAAAGAGGATTGTGGTCACTACACAAGAATCGGAAAGCTATTAT
CATTACAAGGACAATAGAGTCCTCCCTCCACACGTTGACGCGGAACTTGCCAACGCGGAAGCTTGGTGGTACAAACCAGAGTACATCATC
AATGAGCTCAACATAAACTCTGTCATTACAACTCCGTGCCATGAAGAAATTTTGCCCATCAATGCGTGGACTACTCAGAGACCTTACACG
TTGAGAGGCTATGCTTATTCTGGTGGAGGTAAAAAGGTAACTCGAGTGGAAGTGACTTTGGATGGAGGAGAGACATGGAGTGTGTGTACA
CTTGATCACCCAGAGAAGCCAACAAAGTATGGCAAGTACTGGTGTTGGTGCTTTTGGTCACTCGAGGTTGAGGTGCTTGACTTGCTTAGT
GCTAAAGAAATTGCTGTACGAGCTACCGATGAGACCCTCAACACTCAACCCGAGAAGCTTATTTGGAACGTCATGGGAATGATGAACAAT
TGTTGGTTTCGAGTGAAGATGAATGTGTGCAAACCTCACAAGGGAGAGATTGGTATAGTGTTTGAGCATCCGACTCAACCTGGAAATCAA
TCGGGTGGATGGATGGCAAAGGAGAGACACTTGGAGATATCAGCAGTGGCTCCTCCAACACTAAAGAAGAGTATATCAACTCCTTTCATG
AACACAGCTTCGAAGATGTATTCCATGTCCGAGGTGAGGAAACACAACTCTTCAGACTCTGCTTGGATCATAGTCCATGGACATATCTAC
GATGCCTCACGTTTCTTGAAAGACCATCCCGGTGGTGTTGACAGCATTCTGATCAATGCTGGAACTGATTGTACTGAGGAATTTGATGCA
ATTCATTCTGATAAGGCTAAGAAGCTATTGGAGGACTTTAGGATTGGTGAACTCATAACTACTGGTTACACGTCTGATTCGTCTCCAAAC
AGTTCTGTCCATGGATCCTCTTCGATCAGTAGCTTCTTAGCACCTATTAAGGAGCTTGTTCAAACACCAACAAGGAGTGTAGCTCTCATC
CCAAGGGAAAAAATCCCTTGCAAACTCGTCGACAAGCAATCCATCTCCCATGATGTTAGGAAATTCAAATTTGCATTACCCTCTGAGGAT
CAAGTCTTAGGGTTACCTGTTGGCAAACACATATTCCTCTGTGCCACAGTTGATGACAAACTCTGTATGCGTGCCTACACGCCTACTAGC
ACAGTCGATGAAGTAGGGTTCTTCGAGTTGGTTGTCAAGATCTACTTCAAAGGTGTTCACCCTAAATTCCCTAATGGAGGTCAAATGTCA
CAACATCTTGATTCTCTCCCAATAGGTGCATTCCTTGACGTTAAAGGTCCATTAGGTCACATTGAATACCAAGGTAAGGGTAATTTCTTA
GTCCATGGTAAACAAAAGTTTGCCAAGAAGTTAGCTATGATAGCGGGTGGAACAGGTATAACTCCAGTATATCAAGTAATGCAATCAATA
TTGAAAGATCCTGAAGACGATACAGAGATGTATGTGGTGTATGCAAACAGAACGGAGGATGATATTTTGCTCAAAGACGAACTTGATGCA
TGGGCAGAGCAAGTTCCAAATAGGGTTAAAGTATGGTATGTCGTTCAAGAATCCATTACACAAGGATGGAAGTATAGTACAGGATTCGTT
ACAGAATCGATTCTTAGAGAACATATACCTGAACCATCTCATACAACATTGGCATTAGCATGTGGACCACCTCCAATGATACAATTTGCT
ATTAATCCAAACTTGGAGAAAATGGGATATGACATTAAGGAGGAACTATTGGTGTTCTAAATTGGATGGTGATGATGATAGATGATATAT
CTCTTTGGAGGAATAAATTCTTTTGTATTTTCAGTTGTACATATTGTGTTTTTGTTTATCATCAAAATGTACTACTTCTTGTAGTTCTTA
CATTTTAATTTTCTACTCAACTTTAGGTATAAAATGTTGTACTGTGTACTAGTATGTGTATGTCAAAGTTAAGATTGTATTCATCATGGA
ATTACAGTAACTTTGTTGTCACAAGTCTTGTTGTAGAGATTTTTACCAAATTAATGTGTATATATATATAGTAAATTCCAAAAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	LC	Leaf Mature leaves	5712	51
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (73)

Alignment image suppressed for unigene with 73 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P115668 (919 Aa)

MAASVENRQYTHLEPGLSGVGRTFKPRPDSPVRGCNFPPSSNHELPFQKKQNPPIYLDYSSSEDEDDDDEKNEYVQMIKKGKTELEPSIH
DTRDEGTADNWIERNFSLIRLTGKHPFNSEPPLSRLMHHGFITPVPLHYVRNHGPVPKASWSDWTVEVTGLVKRPMKFTMDQLVNEFPSR
ELPVTLVCAGNRRKEQNMVKQTIGFNWGAAAVSTTVWRGVPLRALLKGAVFRVRKKARLMSVSEGSDVLPGGGGSKYGTSIKKEFAMDPS
RDIIVAYMQNGEMLSPDHGFPVRMIIPGFIGGRMVKWLKRIVVTTQESESYYHYKDNRVLPPHVDAELANAEAWWYKPEYIINELNINSV
ITTPCHEEILPINAWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGETWSVCTLDHPEKPTKMASTGVGAFGHSEVEVLDLLSAKEIAVRA
TDETLNTQPEKLIWNVMGMMNNCWFRVKMNVCKPHKGEIGIVFEHPTQPGNQSGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYS
MSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTEEFDAIHSDKAKKLLEDFRIGELITTGYTSDSSPNSSVHGSSS
ISSFLAPIKELVQTPTRSVALIPREKIPCKLVDKQSISHDVRKFKFALPSEDQVLGLPVGKHIFLCATVDDKLCMRAYTPTSTVDEVGFF
ELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDT
EMYVVYANRTEDDILLKDELDAWAEQVPNRVKVWYVVQESITQGWKYSTGFVTESILREHIPEPSHTTLALACGPPPMIQFAINPNLEKM
GYDIKEELLGSKLDGDDDR

SignalP predicts non-secretion with a score of 0.032

IPR000572 Oxidoreductase, molybdopterin binding
IPR005066 Mo-co oxidoreductase dimerisation domain
IPR001093 IMP dehydrogenase/GMP reductase
IPR001221 Phenol hydroxylase reductase
IPR008333 Oxidoreductase FAD-binding region
IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR008335 Eukaryotic molybdopterin oxidoreductase
IPR001199 Cytochrome b5
IPR001834 NADH:cytochrome b5 reductase (CBR)

Prediction based on longest six frame method

>SGN-P242022 (949 Aa)

PFSQYSFQNHTKNHQNLIRNLFFLLPNSLIHNFILKKSMAASVENRQYTHLEPGLSGVGRTFKPRPDSPVRGCNFPPSSNHELPFQKKQN
PPIYLDYSSSEDEDDDDEKNEYVQMIKKGKTELEPSIHDTRDEGTADNWIERNFSLIRLTGKHPFNSEPPLSRLMHHGFITPVPLHYVRN
HGPVPKASWSDWTVEVTGLVKRPMKFTMDQLVNEFPSRELPVTLVCAGNRRKEQNMVKQTIGFNWGAAAVSTTVWRGVPLRALLKRCGVQ
SKKKGALNVCFEGSDVLPGGGGSKYGTSIKKEFAMDPSRDIIVAYMQNGEMLSPDHGFPVRMIIPGFIGGRMVKWLKRIVVTTQESESYY
HYKDNRVLPPHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINAWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGETWSVCT
LDHPEKPTKYGKYWCWCFWSLEVEVLDLLSAKEIAVRATDETLNTQPEKLIWNVMGMMNNCWFRVKMNVCKPHKGEIGIVFEHPTQPGNQ
SGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYSMSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTEEFDA
IHSDKAKKLLEDFRIGELITTGYTSDSSPNSSVHGSSSISSFLAPIKELVQTPTRSVALIPREKIPCKLVDKQSISHDVRKFKFALPSED
QVLGLPVGKHIFLCATVDDKLCMRAYTPTSTVDEVGFFELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFL
VHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDTEMYVVYANRTEDDILLKDELDAWAEQVPNRVKVWYVVQESITQGWKYSTGFV
TESILREHIPEPSHTTLALACGPPPMIQFAINPNLEKMGYDIKEELLVF

SignalP predicts non-secretion with a score of 0.148

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101530	Cytochrome b5	85
2	120603	Mo-co oxidoreductase dimerisation domain - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase molybdopterin binding - Biological Process: electron transport (GO:0006118) Eukaryotic molybdopterin oxidoreductase - Biological Process: electron transport (GO:0006118)	8
5	133274	Nitrate reductase NADH dependant - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) - Molecular Function: molybdenum ion binding (GO:0030151) - Biological Process: nitrate assimilation (GO:0042128) - Molecular Function: oxidoreductase activity acting on other nitrogenous compounds as donors with NAD or NADP as acceptor (GO:0046857) - Molecular Function: FAD binding (GO:0050660) Oxidoreductase FAD/NAD(P)-binding - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Flavoprotein pyridine nucleotide cytochrome reductase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) NADH:cytochrome b5 reductase (CBR) - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Cytochrome b5 Mo-co oxidoreductase dimerisation domain - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase FAD-binding region - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) Oxidoreductase molybdopterin binding - Biological Process: electron transport (GO:0006118) Eukaryotic molybdopterin oxidoreductase - Biological Process: electron transport (GO:0006118)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (3)

Unigene	Build
SGN-U218881	Lycopersicon Combined #3
SGN-U225781	Lycopersicon Combined #3
SGN-U229750	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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