Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577265, SGN-U580864, and SGN-U583207 in the current build, Tomato 200607 #2

Unigene SGN-U313146

Unigene Basic Information

Unigene ID:	SGN-U313146
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313146
mRNA sequence:	Length: 2254 bp

>SGN-U313146 Tomato 200607 #1 (308 members)
ATCGGCCGAATTGATCTTCTATCTGATTTCTATTATAATTTCTCTGAATTGCCTTCAAATTTCTCTTTCAAGATGCAGATCTTTGTGAAA
ACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCTGATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATT
CCCCCGGATCAGCAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAACATCCAGAAGGAGTCCACC
CTCCATTTGGTGCTCCGTCTACGTGGTGGTATGCAGATCTTCGTGAAGACTCTCACGGGTAAGACGATTACCCTTGAGGTCGAAAGCTCA
GACACCATTGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGTTGATCTTTGCAGGAAAGCAGTTG
GAAGATGGCCGCACCCTAGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAGATCTTC
GTTAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTGGAAAGCTCCGACACCATTGACAACGTGAAGGCTAAGATCCAGGATAAGGAA
GGGATCCCCCCAGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGGCTGACTACAACATCCAGAAGGAG
TCTACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGTATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTGGAA
AGCTCCGACACCATTGATAATGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCTTCAGACCAGCAGAGGTTGATTTTCGCTGGTAAG
CAGCTCGAGGACGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTACGTGGTGGTATGCAA
ATCTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCCGACACCATTGACAATGTCAAGGCCAAGATCCAAGAC
AAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTATAACATCCAA
AAGGAGTCGACCCTGCACTTGGTGCTTAGGCTGAGGGGAGGAATGCAGATCTTTGTGAAGACCTTGACCGGGAAGACCATCACTTTGGAG
GTGGAGAGTTCTGACACCATCGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAGCAGAGGTTGATTTTCGCT
GGTAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAATATCCAGAAGGAGTCCACCCTGCACCTTGTCCTCCGTCTCCGTGGTGGT
TTTTAAGTTGTGGTTGTCTGGTTGCGTCTGTTGCCCGTTGTCTGTTGCCCATTGTGGTGGTTGTGTTTGTATGATGGTCGTTAAGGATCA
TCAATGTGTTTTCGCTTTTTGTTCCATTCTGTTTCTCATTTGTGAATAATAATGGTATCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAATAAAGGTGGCATTGGGGGAAGGATGGGCTTTGACTCGCGCAGACATGTTTACTCAATCAATTCTCGCTGATTGTGG
CATTCCCATTGAACCGGAGCAGGTTTCTAATGCTTCTCCATGTCCATTTGGTCCTGTTTCTCAATTGCTTAGGGAACTCAAAGTTGTAGA
AGACAAAACTGCCACCCTTGAATTGGAAAACTAGACTTTGCGTGGTGAACTTCGCCCTTCCCATGCTGAGATTGATCGTCTGAAAGATCA
CTTGGTGCAACAACAGCTTGTTAACAATGCAAGGGTTGACAGAGTCCTTGATGTGCTTGTTTCTTCCTCCTCCCATCCTTCCAAGCCTAG
CCAATCCTCAACTTAAATAGAACTTAGTATGCACCTGGTTCTTTTGTTGTGTGGATTTTTAACTCTGGTTTGCTATCTTGTTTTGTGTTG
ATAAAACATTTTTTGTGGTGGCTCAACTAATTGAGCTTAAAATGTTGATAGATTTTTGATAGTCTGCTGTGGATTTTTTCTGGTTCTTTT
GTGGTTACTTAAACTCTTTTTGATTTGTCAAAAGGAGAATATTATATATTACTTTACACAGGTTTGTCTTCATCAAAAAAAAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	124
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	31
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	25
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	32
Solanum lycopersicum	cLER	leaf 4 weeks	5127	8
Solanum lycopersicum	cLES	leaf 4 weeks	5243	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	13
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	8
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	12
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (308)

Alignment image suppressed for unigene with 308 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101399	Ubiquitin - Biological Process: protein modification (GO:0006464)	297
2	118458	Ubiquitin - Biological Process: protein modification (GO:0006464)	119
5	128956	Ubiquitin - Biological Process: protein modification (GO:0006464)	117

Preceding Unigenes (5)

Unigene	Build
SGN-U212670	Lycopersicon Combined #3
SGN-U212672	Lycopersicon Combined #3
SGN-U212674	Lycopersicon Combined #3
SGN-U212677	Lycopersicon Combined #3
SGN-U212679	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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