Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U567765 and SGN-U588487 in the current build, Tomato 200607 #2

Unigene SGN-U313283

Unigene Basic Information

Unigene ID:	SGN-U313283
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313283
mRNA sequence:	Length: 2256 bp

>SGN-U313283 Tomato 200607 #1 (89 members)
CCCTTCGTCACGCTAAGGCTCTCTCAAAAACCTTGGAACACTCTAGAACCTAAACCCTTTCTTTTCACACTATCTGCACACCATTTAAGC
CTCCATCTTCTTCATCTCCAACACGCCATTATTTGCTTTCAGTGAGTTCGATTATATCAATCAATCAATCTTCTGCCTGTGTGTTCACAT
ATTGTGTTTGACGGAAAAATGGACGATGATTTTGGTATTCCACCGGTCGAGGGAATGGACGAGGACATGGATCTGCCGGAGGACAGTTCG
ACCATGAAAGTAGGCGAGGAGAAGGAAATTGGAAATCAGGGATTGAAGAAGAAGCTTGTTAAGGAAGGTGAAGGTTGGGAAACTCCTGAG
CCTGGTGATGAAGTCGAAGTTCATTATACTGGAACTCTGCTCGACGGAACCAAGTTTGATTCCAGCCGCGATAGAGGGGACCCCTTCAAG
TTTACTCTCGGTCAAGGACAAGTAATTAAAGGATGGGATCAAGGTATAAAGACAATGAAGAAAGGTGAAAATGCTATTTTCACCATTCCT
CCTGAGCTGGCTTACGGAGAGAGTGGTTCTCCTCCAACTATCCCTCCAAATGCCACTCTACAATTTGATGTGGAGTTGCTATCATGGGTG
AGTGTAAAAGACATTTGCAAGGATGGTGGTATTTTCAAAAAGATCCTCACAGAGGGGGAAAAATGGGAAAATCCAAAAGATCTTGACGAA
GTATTAGTCAAGTATGAAGCTCAGCTCGAAAATGGCACAGTGGTGGGAAAATCAGATGGAGTGGAGTTCACTGTTCAAGATGGTCATTTT
TGTCCTGCTCTTGCTAAGGCTGTGAAAACTATGAAGAAAGGTGAAAAGGTCCAATTGACAGTGAAGCCACAATATGGCTTCGGAGAGAAA
GGAAAACCAGCCTCGAGTGATGGAGGAGCAGTTCCTCCTAATGCCACATTACAGATCAACTTGGAGTTGGTCTCCTGGAAAACTGTTTCA
AATGTTACTGATGACAAGAAAGTAGTAAAGAAGATCTTGAAAGAAGGGGAAGGATATGAGAGACCCAATGAAGGAGCTGTTGTTAAATTA
AAACTGGTTGGCAAGCTGCTAGATGGCACAGTCTTCACAAAGAAGGGCCATGATGGGGAAAGTGAAGATAATCTTTTTGAGTTTAAGACA
GATGAGGAACAAGTAATTGATGGGCTGGACAGAGCTGTCATGACAATGAAGAAGGGTGAAGCGGCGCTGCTTACAATTGCACCTGAATAT
GCCTTTGGTTCATCTGAGTCGAAGCAAGATTCAGCTGTTGTTCCTCCTAATTCAACTGTGCATTATGAGGTTGAGCTTGTTTCTTTTCTC
AAGGACAAGGAATCGTGGGATATGAGTACCCCGGAGAAAATTGAGGCTGCTGGCAAAAAGAAAGAAGAAGGGAATGCACTGTTCAAGGCT
GGTAAATACGCAAGGGCATCTAAGAGATATGAGAAGGCTGCTAAATTCATTGAGTATGATACTAACTTCAGTGAGGAGGAAAAGAAACAG
TCTAAAGCATTGAAGATCACCTGCAACTTAAATAATGCAGCTTGCAAGTTGAAATTGAAAGATTACAAGCAGGCTGAGAAACTGTGTACC
AAGGTGTTGGAACTGGATAGTGCAAATGTCAAAGCTCTTTACCGCAGAGCTCAAGCATATATGAACATGGCTGATCTTGATCTGGCTGAA
TTTGACATTAAGAAAGCTCTTGAGATTGATCCTGACAACAGGGATGTGAAGCTTGAGTACAAAGCTCTAAAGGAGAAAGTCAAGGAAATT
AACAAGAAGGACGCAAAGTTCTACGGGAACATGTTTGCAAAGTTGAATAAGCAGGATTCATCAAACTCAGCCAACTCTGCTCCCAAGGAA
CCAGAGCCGATGAGCATTGATAGCAAGGCATAACTTTAACTCAGACATGACATAAAAAGGATCAGCATCATCATTATCTTGACGGTTCAT
ATATGCCATGGAGTCGTTATAGTTGGATTTTAGGAAAGAGTGTTTGCTGAATAATTTTACTGTAATTTCTGATTCTGCATTGGGTACTAT
CAATGGATCCCTCTTGTAATGGAGTATCATCTGGCATCTTTGCTGTGACATATTTTGGTTATTGTGTTCTGTCATTTTGTTGAGTGGAAT
TAATTGAATGTCGTTCGAAATTGATGTAAGCCAAAATCAGTAGTGAAGACCTTACAATAATAGTAGTAAAATTTTCTCAAAAAAAAAAAA
AAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	30
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	5
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (89)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101370	Jacalin-related lectin	591
2	118511	Peptidylprolyl isomerase FKBP-type - Biological Process: protein folding (GO:0006457)	72
5	129308	Tetratricopeptide TPR_1 Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Tetratricopeptide region	26

Preceding Unigenes (1)

Unigene	Build
SGN-U213332	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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