Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578058 and SGN-U591314 in the current build, Tomato 200607 #2

Unigene SGN-U313444

Unigene Basic Information

Unigene ID:	SGN-U313444
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313444
mRNA sequence:	Length: 1824 bp

>SGN-U313444 Tomato 200607 #1 (82 members)
TTTATGTGCCTGTAAATTTTTAAATGTGTTCTGAATAAAATCCTTTTTCTCAAGTTCCAATAAATACTTTGCTCTGCTCTTATAATACTC
TCGCTATTCATCACTTCACTTGATAGAAAATATCTATCAAATGGCAATTGTTACAGTAATTGGTGCAACGATTGGCATTTTGATAGCCCT
ATTTTTTGTAAAATCGTTTTATACATTATGGTGGTGGCCAAAGATGATCGAAAAGAAGCTGAAGAAGGAAGGTATTCATGGTCAGCCGTA
CCAATTTCTGTTTGGAAATCTGAAAGAGATGACGAGAATGTCTAGAGAAGCAAAGAAAAAACCATTAGTAAATCACGATATTGTTCCTTG
GGTGAATCCTTTTATTCTTCATCTTTCTAAAACTTACGAGAGATTATTTGTGATGTGGGCTGGACCAACCCCTCGGATTACAGTAACAGA
TCCAAAGCTAATAAAAGAAGTGGTGAACAGACATAATGAATTTCAAAAGCCTCAAGCCAATGCCTTCATTGATATGTTTGTTACTGGACT
TGCTAGTTACAATGGTCAAAAATGGGATCACCATAGAAAGATACTAAACCCGGCTTTTCATATAGAGAAGATTAAGAGGTTGTACCCAGC
ATTTTGCGAGTGTTGTGATGAAATGATAAATAGATGGGAGGACTTGGTTAGCAAAACTGGAAGTTGTGAATTGGATGTAGCAGATGAATT
TCTAAATGTAGGTGGAGATGTTATATCGAGAGCTGCTTTTGGTAGCAATATTGAAGAAGGAAGGACTATTTTCATACTTCAGAAAGAGCA
GTGCGATCTTATTTTGGCTTCTCCATTTACTCTCTTCTTTCCCTTACTAAGATTCTTTCCAACAGAATCAAACAGAAGAGCAAGATACAT
CTACAAAAAAGTGTTATCATTGATCAAAGGAATCATAGAGAAGAAAGAAGACGCTATGCGAAGAGGAGTCTCAGAAAGTGATGATATATT
AGGATTACTCTTAAAAGGAGGACTGTCAACCACTGAAATAATTGAAGAATGTAAGGAATTCTATCTTGCAGGACAAGATACAACCACAGC
TTTGCTCTCCTGGACATTGGTAGCCTTGAGTATGCATCCTGAGTGGCAAGACAAAGCTAGAAATGAAGTATTTCAAGTACTTGGAAAAAA
CAAACCAAAGTTTGAGGACTTGAATCAATTAAAAATAATGAACATGATCTTCCAAGAGGTGTTGAGATTATACCCAGCACTCACCCTTAT
GCGAAGCACCTCAAAGGACACTAAATTGGGAGAAATGACAATTCCTGCAGGAGTACAAATTTTTGTGCCTATATACATAGCACATCGCGA
CCCCCAAGTATGGGGAGACGATGCACTGATTTTCAATCCAAATAGGTTCTCAGAAGGGGTATCCAAAGCTGCAAAAGAGCCATTGTATTT
CCCCTTCGGTTGGGGTCCTCGAATGTGCATTGGTAATAACTTTGGAATGGCAGAAGCAAAGCTCGTTTTATCTCAAATTCTGCAGAGGTT
TTGGTTCAAGCTCTCTCCTTCCTATGTTCATGCCCCTCAGGCAATACTCGTTATGAAGCCTCAGTATGGTGCTCAGATAATCCTCAACAA
GCTCTGATGGTTTACTTAATTATCACAACTACTAGTACTAGTTCAATAAATGAGGTTCATATGTATTCTGCATTTCAATACCATGTTATT
TTTGTATGTGTGACAAACTCTCATTAGCACTATTAAATAATTGTCATCATTAGTTATCGTCTTTTCTTTGGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAACTCGAGGGGGGCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF249329	cytochrome P450 AF249329	cytochrome P450

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	13
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	10
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	15
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (82)

Alignment image suppressed for unigene with 82 aligned sequences.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101365	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	908
2	118455	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	121
5	128959	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	116

Preceding Unigenes (2)

Unigene	Build
SGN-U212981	Lycopersicon Combined #3
SGN-U212982	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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