Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578003 and SGN-U580472 in the current build, Tomato 200607 #2

Unigene SGN-U313542

Unigene Basic Information

Unigene ID:	SGN-U313542
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313542
mRNA sequence:	Length: 1024 bp

>SGN-U313542 Tomato 200607 #1 (75 members)
AACAAATAGAAAAGTTTTTTTTTTTGAATTGTCCACTCATATATAACAACAGTTATCTGTTATTATTATTAGAGAGCAAATATATAATTG
CAAACAAAGAAGAGAGATATTTCAGTTTGCTTTCTTCATATTCATATATTTTGTGAGTATTTAATACGAAAGAAATAAAGATGGGATACT
GGAAAGCAAAGGTTCTTCCAAAGATCAAGCAGATCTTTGATAAAAATGGACCCAAGAAAACTGCTGCTGCTGAGGCATGCAAGACTTTTG
ATCAAGCTAAGGAGGAATATAGCAAGGAGTTTGAAGAGAAGAAGACTGAGCTTCAACCCAAAGTTGTTGAAATTTATGAAGCTGCTGCAG
TTGAGATCAAGAGCTTAGTGAAGGAACCAAAGGGTGCAGGGCTGAAGAAAAACTCAGATGGGGTTCAGAAATTCCTTGATGACCTTGTCA
AGATTGAATTTCCGGGATCAAAAGCTGTTAGCGAAGCAAGTTCAAACTTTGGGCCTTCCTATGTATCGGGCCCAATTATTTTTGTGTTCG
AAAAAGTTTCCACTTTCATAGTCACAGAAGATAAGAAGGAAGAGGAACCCGCGGCTGCTGATGACGTGCATGCACCAGCCGCCACGTCAA
CTGAAGAGGTGGCGGTGAAGGTGAAGGAGAAGGAGAAGGAGATAGTTATTGAGTCTGGAGAACCAAACAAGGAAGAAGCACCTGCTACTG
TTGTTGCTGACGTGGCACCTGCAACTAAGGTGGAAGAAGCACCAAAGGTGGTTTAATCATCGTATACGTCTAAAAATTTGCATCTTTATC
TTCTTCTTTTTTTTAATGTGTCATGGTTATTTACTGTGAGAAAAACTTGATTTATTATTCTTTTGTTAGTGTTTCTCTCCTTGTTTATTT
TCTTTGTACCATATTATCTCATCAACAAAGTCTTTGTGTATTTTTATTGAAAAAAAAAAAAAAAAAAAAAAATACTCTAGTAATTAAGAT
GTTTATATAAGTCGAAGGGATTGAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	9
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	11
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1

mRNA member sequences (75)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (6)

Annotations (manual: 3 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101424	Cellular retinaldehyde-binding/triple function C-terminal	202
2	120801	DREPP plasma membrane polypeptide	8
5	131459	DREPP plasma membrane polypeptide	7

Preceding Unigenes (1)

Unigene	Build
SGN-U213704	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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