Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U582604 in the current build, Tomato 200607 #2

Unigene SGN-U313659

Unigene Basic Information

Unigene ID:	SGN-U313659
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313659
mRNA sequence:	Length: 1400 bp

>SGN-U313659 Tomato 200607 #1 (73 members)
GCACGAGGGCATTCTCTTCACTGCTGTATCGTCGTCTCACTTGCCTTTCAGAGGATAACCGGAGCGGCGACCACCTTGCTTGACAAAATG
GCGCAAGAATCACTTGTCCTTCGCGGCACCATGAAAGCCCACACCGATTGGGTCACTGCCATCGCCACCCCAATTGATAACTCTGACATG
ATTGTTACTTCCTCCAGGGACAAGTCCATCATTGTCTGGTCTCTCACCAAGGATGGCGCACAGTACGGTGTCCCCCGCCGCCGTCTCACA
GGCCACGGCCACTTTGTTCAGGATGTTGTTCTCTCCTCCGACGGTATGTTTGCTCTCTCTGGTTCTTGGGATGGAGAGCTTCGCCTTTGG
GATCTTCAAGCCGGCACTACTGCTCGCCGTTTTGTTGGTCACACTAAGGATGTTCTCTCCGTTGCTTTTTCCGTTGATAACCGTCAGATT
GTGTCCGCTTCACGGGACAAGTCTATCAAGTTGTGGAACACTCTCGGTGAGTGTAAATACACCATTCAGGACGGAGACTCACACTCCGAT
TGGGTTTCGTGTGTGCGTTTCAGCCCAAACACTCTCCAGCCAACTATTGTTTCTGGTTCCTGGGATCGTACTGTGAAAATCTGGAACCTC
ACCAACTGTAAGCTGCGTTCGACTCTTGCTGGACACTCTGGCTATGTGAACACTGTGGCAGTGTCACCTGATGGTTCCTTGTGCGCTAGT
GGTGGCAAGGATGGAGTTATTTTGCTCTGGGATTTGGCTGAGGGGAAGAAGCTCTACTCCCTTGACGCTGGCTCCATCATTCATACTCTC
TGCTTTAGTCCTAACAGGTACTGGCTCTGCGCAGCCACCGAGTCTAGCATTAAGATTTGGGACTTGGAGAGCAAGAGCATCGTGGTTGAC
CTTAAAGTTGATCTCAAGCATGAGAGTGAGATGGCTAACGAGAGTGGAACTGCACCAAAAACCAAGGTCATTTACTGTACCAGTTTGAGT
TGGAGTGCTGATGGAAGCACACTTTTCAGCGGATATACAGATGGTTTGATTAGGGTTTGGGGTATTGGGCGTTACTAGGAATTGCATCTA
GGCAAGCTTTTTGGCTATAGTCTCCATTAAAGACGTTTAGATTGTCCTTGAAAATGTATCTGGATTCTCTTTGTTTCTCATGAGTTTGAG
AGTTTTGATGTTCCATTTTTGGAATTCTGTTTAGAATTTCGTTACAAGCTTGTGTTGCTGTTATTCCTCCCGGGCTGGTTATGTTTTCAA
TGCTTTGACCTAATACATGGTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGCCCCCCCCCCCCCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
arca2	LeArcA2 protein containing 7 WD40 repeats

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (73)

Alignment image suppressed for unigene with 73 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101368	WD-40 repeat	806
2	118510	WD-40 repeat	72
5	129797	WD-40 repeat	15

Preceding Unigenes (1)

Unigene	Build
SGN-U213877	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer