Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581207 in the current build, Tomato 200607 #2

Unigene SGN-U314045

Unigene Basic Information

Unigene ID:	SGN-U314045
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314045
mRNA sequence:	Length: 1991 bp

>SGN-U314045 Tomato 200607 #1 (26 members)
TCTTTTTCTATTCACATCCACACAAATTTCTTCACTTGCCAGTTCAAAAAATGGACCAACTACATTCTCTTCTTTTCAAGATTTCCCATG
GCAACAGCTTCAGCTGTTCCAAGAAGTTTATTTCTCCCCAATTTCCAATACCCAACAACTCTCTATCAAATAAAGCTCAAATCTTTACAA
ACCCCACTTAGAATCCTTCCTCAGAAATCCAATTTGAGCTCTAATGTAGTCAATATCAAGACAAATTTCGTCGAAAATACACAATCCCAT
GAAAGGGGTGTTAAGAGAATTCACTCTAGTAGAAGACTTATTGTTAGATCCATGGGATCAGACAGTAGTGTTGCATCCACAGGGTTACCA
AGCAAGGTGTTTGGAGTATTGCATTTATTAGTTTCACTTGGAATCATACTGGCTATGGATAAATTGTTAAAGAAAGCATTTGTGGAAGCT
GCTATTAAGTTCCCAAGTGCTCTATTTGGAATGTTTTGCACATTTGCTGTTCTAACGATTCTTGACTCCGTTGTTCCTAAGGCTGCAGAA
GGATTGATGAACTTTTTTGAGCCTGCACTTTTGTTTATCCAGAGATGGCTTCCATTGTTTTATGTACCTTCTTTGGTTGTTCTCCCTCTT
GCCGTCAAGGATGTTCCTGCAGCTTCTGGGGCCAAGATTTGTTTTATACTAGTTGGAGGCTGGTTGGCTTCTCTTTGTGTTGCGGGTTTC
ACAGCTATATCCGTGAGGAAAATGGTAAAGACTGAGATGATACCTGCTGAGCCCATGGCAAAGCCTTCTCCATTTTCTTCTTTGGAGATG
TGGACTTGGAGTGGTATCTTTTTGGCATCATTTGTTGGTGCACTTTACTATCCGACGGCACTGGGAACAAGTGCTAGAACATGCCTACCC
TTTCTACTTTCATCTACTGTATTAGGCTACCTAATTGGATCAGGGCTTCCATCGGCTGTAAAGAAGGTTTTCCATCCAATCATCTGTTGT
GCAGTCTCTGCAGATCTTGCAGCCATTGCTTTTGGATACCTTTCTAAGTCTGGACTTGATCCAGTTCTTGGGGATTATCTTACAAAGGCC
GCATCTAATCCTGGAGCTGGGGACATTCTCATGGGATTTTTGGGATCAGTCATCATCTCCTTTGCCTTCTCCATGTTCAAGCAAAGAAAG
CTTGTTAAAAGGCATGCTGCTGAGATTTTCACCTCTGTCATTATATCCACGCTATTTTCACTATATTCAACCGCACTCATTGGAAGGCTG
ATTGGATTGGAGCCAAATTTGACTATATCGATCCTACCACGATGCATAACTGTCGCACTAGCTCTCAGCATTGTTTCTCTATTTGAAGGT
GTGAATTCATCCCTAACAGCAGCTGTCGTTGTACTAACTGGTCTGGTGGGAGCAAATTTTGTTCAGGCTGTGCTGGATAAACTTGGCTTC
AATGATCCTATTGCTCGAGGAATTGCAACTGCATCAAGTGCTCATGGGCTCGGAACAGCAGCTTTGTCAGCTAAGGAACCTGAAGCTCTT
CCATTCTGCGCTATAGCATATGCCCTGACTGGTATATTTGGTTCTCTTATATGCTCAGTTCCAGCAGTAAGACAGAGCCTATTGGCAATT
GTCGGCTGAGCTTGTTCATCTTCACATTCATCTTTCTTCATTCCAATTCGATCATTCTGTTGAGATAATGCCAGCACAATCACCCAAGTT
AAGTTTCAGAAGGCAACGAGCAACTTGCTGTTTCTTCACAATGTTCAGATTCTAGATGCAAGGTGTTTATAAAGTTAAAGTTTCCATTGT
TTCTCTATCACTCTTGGGGAACATGATTAGGAACTTTCCTGCATCTAGTTTTAGGTTTACTTAGGATGTGTATAGAGGTACATATCCATA
GTTTTTCGTTGTAAGGTTTTCTCCTGTAAATTGAAACGAATTGCTACTTCTTTTATGAAAGTAAGCACAGCTGAACAGCATGAAAAAAAA
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5

mRNA member sequences (26)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	104182	LrgB-like protein - Cellular Component: membrane (GO:0016020) Duffy antigen/chemokine receptor - Molecular Function: rhodopsin-like receptor activity (GO:0001584) - Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186) - Cellular Component: integral to membrane (GO:0016021)	4
2	123058	LrgB-like protein - Cellular Component: membrane (GO:0016020) Duffy antigen/chemokine receptor - Molecular Function: rhodopsin-like receptor activity (GO:0001584) - Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186) - Cellular Component: integral to membrane (GO:0016021)	4
5	133257	LrgB-like protein - Cellular Component: membrane (GO:0016020) Duffy antigen/chemokine receptor - Molecular Function: rhodopsin-like receptor activity (GO:0001584) - Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186) - Cellular Component: integral to membrane (GO:0016021)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U214105	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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