Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578416 and SGN-U579420 in the current build, Tomato 200607 #2

Unigene SGN-U314358

Unigene Basic Information

Unigene ID:	SGN-U314358
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314358
mRNA sequence:	Length: 1802 bp

>SGN-U314358 Tomato 200607 #1 (298 members)
AAAACCTGTTTTGAAAAATCCAGTGACCAAAACATGTAAATGGTTTTACTGTGGCCTATTGTTTTTTCACCTTTCCCAATTATAAATGGC
GATTGGCGGCCAATCGGCCGAATTAACCAAAATTTGTGTTCTATAAAAAGTTTTCATATTTAGTGATCACTAAAAAAAAATCAAGAAGAT
GTCGACTACTGTAGGCCAAGTCATTCGTTGCAAAGCTGCTGTGGCATGGGAAGCTGGTAAGCCATTAGTGATGGAGGAAGTAGATGTTGC
TCCTCCACAGAAAATGGAAGTTCGTCTTAAGATCCTCTATACTTCACTCTGTCATACTGATGTATACTTCTGGGAAGCTAAGGGTCAAAA
TCCAGTCTTTCCTCGAATTCTTGGACATGAAGCAGCAGGGATTGTGGAGAGTGTTGGAGAGGGAGTAACAGACCTTGCACCAGGAGACCA
TGTTCTTCCTGTCTTTACAGGGGAATGTAAAGATTGTGCTCACTGTAAATCTGAAGAAAGCAATATGTGTAGCCTCTTAAGGATTAACAC
TGACAGGGGAGTGATGCTTAATGATGGAAAATCAAGATTTTCCATCAATGGAAACCCCATTTACCATTTTGTTGGGACCTCTACTTTTAG
TGAGTACACCGTGGTTCATGTTGGATGTGTTGCAAAAATTAACCCTCTTGCTCCTCTTGACAAAGTATGTGTCCTTAGTTGTGGAATTTC
GACAGGCCTTGGAGCAAGTTTGAATGTTGCTAAACCAACAAAAGGCTCAAGTGTGGCTATATTTGGACTAGGAGCTGTAGGCCTCGCGGC
TGCAGAAGGAGCCAGAATTGCTGGTGCCTCGAGGATAATTGGTGTTGATTTAAATGCTAGTAGATTTGAGCAAGCTAAGAAATTTGGTGT
GACAGAGTTTGTGAACCCAAAGGACTATAGTAAACCAGTTCAAGAGGTAATTGCTGAGATGACTGATGGCGGAGTCGATAGGAGTGTGGA
ATGTACTGGTCACATTGATGCTATGATTTCAGCATTTGAATGTGTCCATGATGGCTGGGGAGTGGCGGTTCTTGTTGGTGTACCCCATAA
AGAAGCTGTGTTCAAGACACATCCTCTGAACTTTTTGAATGAACGGACTCTCAAAGGAACCTTCTTTGGAAACTACAAACCTCGTTCGGA
TATTCCTTGTGTTGTTGAGAAATACATGAACAAAGAACTTGAATTGGAGAAATTCATCACTCATACACTTCCATTTGCTGAAATCAATAA
GGCTTTCGATTTAATGCTGAAGGGAGAAGGCCTTCGTTGCATCATCACCATGGCGGACTAAACTTTCTGTCCTAGAAAAGGAGCTTCTAC
TGTTTGAGAAAAAAGACCAATAAATTGTCACTGTCTTATTTTCCCTTTCGTGTTTGGTTGAGTTGTAACATTCCATCCATGTCTCTTCTT
TTGTCTTTTGCTTAGATGTTGTGCTTTGCCATATCTCTTTCGATTCTTGTAAAAAATGCAAATTCTCTCTGTTTTATCTCAAGTATATTT
ACAGAATTTCAGTGATTTGATAAAAAAAAAAATTTATCATAATATAATCCGGGGGGGGGCCAGGAACCTCTCCCCCTCACCTCTTCAGGA
AGAACTAGCCAATATGGGAGAGTTGCTGCTGCTTAATTACAACGTTTTGCTTGCTTTTTTTCTTCCTATGTAATAAGCTAAGCTAAAAGC
CTACTTAATAAAACAGAGGACCTTATACGGTCATCTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
adh2	alcohol dehydrogenase-2	alcohol dehydrogenase

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	33
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	7
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	19
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	11
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	48
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	13
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	23
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	9
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	89
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	32
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (298)

Alignment image suppressed for unigene with 298 aligned sequences.
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Markers Information (0)

Expression Data (7)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101421	GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491)	210
2	118545	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	58
5	129056	Alcohol dehydrogenase GroES-like Alcohol dehydrogenase zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase superfamily zinc-containing - Molecular Function: zinc ion binding (GO:0008270) - Molecular Function: oxidoreductase activity (GO:0016491) Alcohol dehydrogenase zinc-binding GroES-like	51

Preceding Unigenes (2)

Unigene	Build
SGN-U212764	Lycopersicon Combined #3
SGN-U212765	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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