Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577441, SGN-U578181, SGN-U578195, SGN-U578305, SGN-U580029, SGN-U580076, and SGN-U593692 in the current build, Tomato 200607 #2

Unigene SGN-U314663

Unigene Basic Information

Unigene ID:	SGN-U314663
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314663
mRNA sequence:	Length: 2801 bp

>SGN-U314663 Tomato 200607 #1 (726 members)
GGTAAATTCGCGATGTTATGACTGTTCTTCCTCCTTGAGCAAAGCTCTCCACAATTGAGTGATCCACCAATAATCTCATTGAATGTTTTT
CACCGTCCAACACAGGTACTGAACTACCATAAACTTGTTTACCAACTCCCGGAGCCTCAGAGGATCTAGTTTGATCAGCACAGAAGTGAG
TCTCTGCACGACCATCAGCTCCTTTAGAAATGTAAAAGTAAACTGGCGTTAGCTCAGATAGCGTTTGATCAGCAATTACTATGACACCAA
ATGGTCCCAAAATGCCTCTGCTAGCAGCACCTCCACTAGTAGAGCAACTGAAACCTACATGATCTGCTTCAATTATTCCCTGAAGCGCGA
CTTTGTCCACTTCAAATGAGGCTTCTATATCCAACTGCACAATAGCTAAACAAGTTTTGGGACTGCAGATTAAGCGCGTGTTTGTAATTT
AAAACAAAAGTAACGCAACAAACCTCTGCAGCTGAGTCAACACGGAGTAGCTCAATTGAGCCTGGTTGAAGATCGACTTGCTTAACAGTA
GGATCACCCACTCTTAAGCTTTCAATTTCTTCCACTGGCCACTGAAGTAGATGAGTCCTCTATCTTCTATTATGGCCACTCAGTGTTATG
ACCCCGAAAACTCCGCCTCTCGTTACACATTACTCCCGGATCAACCCGATTCCGGCCACCGGAAGTCCCTTAAAATCATCTCCGGCATTT
TCCTCTCCGTTTTCCTTTTGCTTTCTGTAGCCTTCTTTCCGATCCTCAACAACCAGTCACCGGACTTGCAAATCGACTCCCGTTCGCCGG
CGCCGCCGTCAAGAGGTGTTTCTCAGGGAGTCTCCGATAAAACTTTTCGAGATGTAGCCGGTGCTAGTCACGTTTCTTATGCGTGGTCCA
ATGCTATGCTTAGCTGGCAAAGAACGGCTTACCATTTTCAACCTCAAAAAAATTGGATGAACGATCCTAATGGACCATTGTATCACAAGG
GATGGTACCACCTTTTTTATCAATACAATCCAGATTCAGCTATTTGGGGAAATATCACATGGGGCCATGCTGTATCCAAGGACTTGATCC
ACTGGCTCTACTTGCCTTTTGCCATGGTTCCTGATCAATGGTATGATATTAACGGTGTCTGGACAGGGTCCGCTACCATCCTACCCGATG
GTCAGATCATGATGCTTTATACCGGTGACACTGATGATTATGTGCAAGTGCAAAATCTTGCGTACCCCGCCAACTTATCTGATCCTCTCC
TTCTAGACTGGGTCAAGTTCAAAGGCAACCCGGTTCTGGTTCCTCCACCCGGCATTGGTGTCAAGGACTTTAGAGACCCGACTACTGCTT
GGACCGGACCACAAAATGGGCAATGGCTGTTAACAATCGGGTCTAAGATTGGTAAAACGGGTGTTGCACTTGTTTATGAAACTTCCAACT
TCACAAGCTTTAAGCTATTGGATGGAGTGCTGCATGCGGTTCCGGGTACGGGTATGTGGGAGTGTGTGGACTTTTACCCGGTATCTACTA
AAAAAACAAACGGGTTGGACACATCATATAACGGGCCGGGTGTAAAGCATGTGTTAAAAGCAAGTTTAGATGACAATAAGCAAGATCATT
ATGCTATTGGTACGTATGACTTGGGAAAGAACAAATGGACACCCGATAACCCGGAATTGGATTGTGGAATTGGGTTGAGACTAGACTATG
GGAAATATTATGCATCAAAGACTTTTTATGACCCGAAGAAAGAACGAAGAGTACTGTGGGGATGGATTGGGGAAACTGACAGTGAATCTG
CTGACCTGCAGAAGGGATGGGCATCTGTACAGAGTATTCCAAGGACAGTGCTTTACGACAAGAAGACAGGGACACATCTACTTCAGTGGC
CAGTGGAAGAAATTGAAAGCTTAAGAGTGGGTGATCCTACTGTTAAGCAAGTCGATCTTCAACCAGGCTCAATTGAGCTACTCCGTGTTG
ACTCAGCTGCAGAGTTGGATATAGAAGCCTCATTTGAAGTGGACAAAGTCGCGCTTCAGGGAATAATTGAAGCAGATCATGTAGGTTTCA
GTTGCTCTACTAGTGGAGGTGCTGCTAGCAGAGGCATTTTGGGACCATTTGGTGTCATAGTAATTGCTGATCAAACGCTATCTGAGCTAA
CGCCAGTTTACTTTTACATTTCTAAAGGAGCTGATGGTCGTGCAGAGACTCACTTCTGTGCTGATCAAACTAGATCCTCTGAGGCTCCGG
GAGTTGGTAAACAAGTTTATGGTAGTTCAGTACCTGTGTTGGACGGTGAAAAACATTCAATGAGATTATTGGTGGATCACTCAATTGTGG
AGAGCTTTGCTCAAGGAGGAAGAACAGTCATAACATCGCGAATTTACCCAACAAAGGCAGTAAATGGAGCAGCACGACTCTTTGTTTTCA
ACAATGCCACAGGGGCTAGCGTTACTGCCTCCGTCAAGATTTGGTCACTTGAGTCAGCTAATATTCAATCCTTCCCTTTGCAAGACTTGT
AATCTTCTTTATTTCGTTTTTTTTTTCTTTTTCATTTGAAGGTTATTTCACCGACGTCCCATCAAGAAAGGGAAGAGGGAGATCAATATA
TGTAGTGTTATTCGCCCTACCTTAGGATTAGATGTCATCTAGCAATGTCAAATCTAGTAGAGTATACAATGTATGGGTTCCTGGAAACCG
AGTAGAGCTTACCTGGATTCTATGTAAACTAAGAAAGCTCAGCAAATATATGCACAAATAATTTACAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
sucr	sucrose accumulator	vacuolar acid invertase

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	36
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	7
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	24
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	15
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	449
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	152
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	4
Solanum lycopersicum	vSlycmRNA		8362	6
Solanum pimpinellifolium	vSpimpmRNA		8	1

mRNA member sequences (726)

Alignment image suppressed for unigene with 726 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (20)

Annotations (manual: 6 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101503	Glycosyl hydrolases family 32 N terminal Glycoside hydrolase family 32 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycosyl hydrolase family 32 C-terminal	97
2	118559	Glycosyl hydrolases family 32 N terminal Glycoside hydrolase family 32 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycosyl hydrolase family 32 C-terminal	54
5	129046	Glycosyl hydrolases family 32 N terminal Glycoside hydrolase family 32 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Glycosyl hydrolase family 32 C-terminal	53

Preceding Unigenes (2)

Unigene	Build
SGN-U212899	Lycopersicon Combined #3
SGN-U212902	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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