Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577310, SGN-U578438, SGN-U579680, SGN-U580380, SGN-U580869, SGN-U581232, and SGN-U593207 in the current build, Tomato 200607 #2

Unigene SGN-U314708

Unigene Basic Information

Unigene ID:	SGN-U314708
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314708
mRNA sequence:	Length: 1643 bp

>SGN-U314708 Tomato 200607 #1 (688 members)
CTCTCAACAAAAATTACGATTGTGTAGAAAAAAAATAAAATAATCATGGCACACTACGAGAACCAATATAGTGCAGGGCAGGCTCTGCAG
ACGGACGAATACGGCAACCCAGTCCGCCAAACTGACGAATATGGCAACCCAATCCAGCAGACTGGAGGGACCATGGGAGAATATGGAACC
ACCGGTACCGGCTATGGAACTCAGGCTGGACACACCACTGGCGTGCTTGGTGGCACCGGTACCGGCTATGGAACTCAGGCTGGACACACC
AGTGGCGTACTTGGTGGGGAACAACGCCAGCATGGTACTCTTGGTGGCATGCTTCACCGTTCTGGCAGCTCTAGCTCCAGTAGCTCTTCT
GAGGATGATGGACATGGCGGTAGAAGGAAGAAGAAAGGGATCAAGGACAAGGTGAAGGAGAAATTGCCAGGAGGTCACAGAGATGATCAA
GCCCATTCAACTGCAACAACTACAACTACTGGTTATGGCATGGAAGGCACTCATGAGAAGAAGGGAATTATGGAGAAGATTAAGGAGAAG
CTTCCAGGCCATCATGGCCCTGGACACCACTAGGAATTGAAGCCGTGGCTAAAAGAATAAATTATCCTTTTAAATATATACATATAAAAT
GTTTGGCTAATTACTTGTATTAGCAGTCGTTTCTAGTTTGTCCTTGCTGTGTGTTTTAAGCTTGGCCTGTCATGTGAATAATAAAGCCAT
GCTAGCCCTTGAAGTGCTAGTGGAAGTATAATCACACATGTAATAAGTCTTTTTTAAGTATGTCGTACCATGTACCTCATGAAAAATTCC
AACACTGGGTTATAGCTTCCTCTATAGTTTCTTCAGCTGCTGTTGCCACCCGCGGCAATGGTGCACAAGCTAGCATGGTTGCACCCTTCA
CTGGACTCAAGTCCACTGCTTCTTTCCCTGTTTCAAGGAAGCAAAACCTTGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTCAGTT
GCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTACGAGACTCTGTCGTACCTTCCTGATTTGTCCGACGAGCAATTGCTCAGCGAAA
TTGAGTACCTATTGAAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTGAGCACGGATTTGTGTACCGTGAGAACCATAAGTCACCAG
GATACTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCATGTTTGGGTGCACTGATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGG
CAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAAGTGCAGTGCATCAGTTTCATCGCTTACAAGC
CCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATTTAGGGGAAGCTTGTTTGAATCCTCCTTAAAG
TTTTTCTCTGGAGAAACTGTAGTAATTTTACTTTGTTGTGTTCCCTTCATCTTTTGAATTAATGGCATTTGTTTTAATACTAAAAAAAAA
AAAAAAAAATGTAATGTATGTATATCAGTTTCTTATAATTTATCCAAGTAATATCTTCCATTCTCTATGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	9
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	35
Solanum lycopersicum	LC	Leaf Mature leaves	5712	24
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	35
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	53
Solanum lycopersicum	cLER	leaf 4 weeks	5127	128
Solanum lycopersicum	cLES	leaf 4 weeks	5243	89
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	210
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	21
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	9
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	50
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (688)

Alignment image suppressed for unigene with 688 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (18)

Annotations (manual: 6 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118508	Ribulose bisphosphate carboxylase small chain - Cellular Component: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) (GO:0009573) - Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977) - Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984)	74
5	129006	Ribulose bisphosphate carboxylase small chain - Cellular Component: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) (GO:0009573) - Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977) - Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984)	70

Preceding Unigenes (4)

Unigene	Build
SGN-U225498	Lycopersicon Combined #3
SGN-U225509	Lycopersicon Combined #3
SGN-U225521	Lycopersicon Combined #3
SGN-U225539	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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