Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U586248 in the current build, Tomato 200607 #2

Unigene SGN-U315100

Unigene Basic Information

Unigene ID:	SGN-U315100
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315100
mRNA sequence:	Length: 1881 bp

>SGN-U315100 Tomato 200607 #1 (46 members)
AGAAATGAGGTTCACCCAATTACTAGAATAGAGTTGACAAGTTAATACGTATTTTACTTCAGCCAGTGCATCTATTTTTCCCCCAATTCC
CTTAACAGCGCCGATATCAATCAATCTTCTCCCATTCTCTGTGAGCTCGAGCTCCGCTGAGAACGAAGATGCAGGCCATCACGAGAAAAC
TAGGGCACCAATCTTTGAAACATCATTCGCCTGCCATTTCATCATTCAAGTCTCTCTATCCTCTTTCTGATGATCACTACTATGGTTATC
TTACTCCGCGCTACGCATCTAACCTTGCCACCGGGGGTGCGGGACCTCTAATTCGTAAGGGAACTGGAGGAAGATCATCCGTTAGTGGAA
TCGTCGCTACAGTCTTTGGAGCTACTGGATTTCTTGGGCGTTATGTTGTACAACAGCTTGCTAAAATGGGCAGTCAAGTCTTGGTTCCTT
TCCGTGGATCTGAGGATTCTCCTCGTCATCTTAAGTTGATGGGTGACTTAGGACAGATTGTTCCTATGAAATACAATCCCCGGGATGAAA
ATTCAGTTAAGGCAGTGATGGCTAAAGCTAATGTTGTGATCAATCTCATTGGAAGGGATTATGAGACGAGAAATTACAGCTTTGATGAAG
TCAACCTCCATATGGCTGAACAGCTTGCAATGATTGCCAAAGAGCATGGTGGTATCATGAGATTTATTCAAGTTTCAAGCTTGGGGGCAT
CTCCTGCATCCTCATCTAGACTGCTCAGAGCCAAAGCTGCAGGGGAAGAAGCTGTTACACGTGAACTTCCTGAGGCAACCATATTGCGAC
CAGCAGTGATGATCGGTACAGAAGATAGAATTCTGAATCCATGGGCATTCTTTGCAAAGAAATATGGTTTTCTCCCTCTAATCGGAGGTG
GTTCAACAAAAATTCAACCTGTATTCGTTGCTGATGTTGCTTCTGCAATTGTTTCTTCTTTGAAAGACAATGGCACCAGCATGGGAAAAG
TTTATGAACTTGGTGGCCCAGATATTTACACTATGCATGATTTGGCAGAGCTCATGTTTGATATGATCCGTGAATGGCCACGCTATGTGA
ATGTTCCTTTCCCTATTGCTAAGGCTATTGCATCTCCTCGAGAATTTTTGCTCAACAAAGTACCAGCTCCAATGCCTGTCCCTACAATAT
TTAATCTGGATGCGATTAAAGCCTTGGCCACGGACAATGTTGTGTCAAAAGATGCTTTGACTTTTGAAGATCTAGGGCTTGCACCACACA
AGGTGAAGGGATATCCAGTTGAATTTCTTATCCAGTATCGTAAAGGTGGACCAAATTATGGATCAACAGTTAGTGAAAGAATGTCTCCTG
AATCTTATCCATGAGGTTCAGTTGTCTAAGCATGAACACAATTTGGATCTTATTTAAAAGTTCATTTCAGCTTCTTTTACAAGATTTCTG
GAGTACAGCCGTGTTCAGCCAGACAAACAGGAAAAAATAAATTCTAAGGGAGTTTTTCAGTAAATGAATGTTGTGTGATGCTGAGACCTA
TACTCCTTTCCCGGAAGAGTTGACTATAATTTTGGTGCTTGTTGCACCGTTGTCTCAACGAGATGAATTGTATTTTCTTCAGAGTTAACT
TCTCTGTTCTCCCTTTGTATTTCACCCAAGTAGTGACCAAGAAAAAGTGGAACATTATTGTAGTGTCAGGGGAACAACTTAATCATTAGC
GTTCTATTTGGTTCAAAAAAAAAAAAATAGTCTCCTAAATAAGGTAACAAAATACCCATTCTACTCTATATTTGCTTATAGTAGAAGCCT
TCTTCACCCGTTTAAATGCCTGCGGAGGTGCTTAAAGGGCCAATGATGTCTTTCTGGTTAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (46)

Alignment image suppressed for unigene with 46 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 10 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102683	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	11
2	120158	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	10
5	130671	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	9

Preceding Unigenes (2)

Unigene	Build
SGN-U215902	Lycopersicon Combined #3
SGN-U216408	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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