Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564724 in the current build, Tomato 200607 #2

Unigene SGN-U315116

Unigene Basic Information

Unigene ID:	SGN-U315116
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315116
mRNA sequence:	Length: 1987 bp

>SGN-U315116 Tomato 200607 #1 (44 members)
CTGTGCTTGACAGAACCCGTCTTGCACTTGCAAGCAAGGCAGAGTGGTACCATCACTTATTGCAGCCATCTGCCGAATATCTAGGATCAA
TACTTGGGGTGGACCAATGGGCTTTGAACATATTTACTGAAGAAATTATACGTGCTGGATCAGCAGCTTCGTTATCCTCTCTTCTTAATA
GACTCGATCCTGTGCTTCGGAAAACTGCAAATCTAGGAAGTTGGCAGATTATCAGTCCAGTTGAAGCCGTTGGATATGTTGTCGTTGTGG
ATGAGTTGATTTCAGTTCAGAATGAAATCTACGAGAAGCCCACAATTTTAGTAGCAAAATCTGTTAAAGGAGAGGAGGAAATTCCTGATG
GGGCTGTTGCCCTGATAACACCAGATATGCCAGATGTTCTTTCACATGTTTCTGTTCGAGCTAGAAATGGGAAGGTTTGCTTTGCTACAT
GCTTTGATCCCAATATATTGGCTGACCTCCAAGCAAAGGAAGGAAGGATTTTGCTCTTAAAGCCCACACCTTCAGACGTAATCTATAGTG
AGGTGAATGAGATTGAGCTCCAAAGTTCAAGTAACTTGGTAGAAGCTGAAACTTCAGCAACACTTAGATTGGTGAGAAAGCAATTTGGTG
GTTGTTACGCAATATCAGCAGATGAATTCACAAGTGAAATGGTTGGAGCTAAATCACGTAATATTGCATATCTGAAAGGAAAAGTGCCTT
CCTGGGTGGGAATTCCTACGTCAGTAGCTCTTCCATTTGGAGTCTTTGAGAAAGTACTTTCAGACGACATAAATCAGGGAGTGGCAAAAG
AGTTGCAAATTCTGACCAAAAAACTATCTGAAGGAGAGTTCAACGCTCTTGGTGAAATTCGCACAACAGTTTTAGAGCTTTCAGCACCAG
CTCAACTGGTCAAAGAGCTGAAGGAGAAGATGCAGGGTTCTGGCATGCCTTGGCCTGGTGATGAAGGTCCAAAGCGGTGGGAACAAGCAT
GGATGGCCATAAAAAAGGTGTGGGCTTCAAAATGGAATGAGAGAGCATACTTCAGCACAAGGAAGGTGAAACTGGATCATGACTATCTTT
GCATGGCTGTCCTTGTTCAAGAAATAATAAATGCTGATTATGCATTTGTCATTCACACAACCAACCCATCTTCCGGAGACGACTCAGAAA
TATATGCCGAGGTGGTCAGGGGCCTTGGGGAAACACTTGTTGGAGCTTATCCAGGACGTGCTTTGAGTTTCATCTGCAAGAAAAAGGATC
TCAACTCTCCTCAAGTGTTAGGTTACCCAAGCAAACCGATCGGCCTTTTCATAAAAAGATCTATCATCTTCCGATCTGATTCCAATGGGG
AAGATTTGGAAGGTTATGCTGGTGCTGGCCTCTACGACAGTGTACCAATGGATGAAGAGGAAGAAGTTGTAATTGATTACTCTTCCGACC
CATTGATAACTGATGGTAACTTCCGCCAGACAATCCTGTCCAACATTGCTCGTGCTGGACATGCTATCGAGGAGCTATATGGCTCTTCAC
AAGACATTGAGGGTGTAGTGAGGGATGGAAAGCTTTATGTCGTTCAGACAAGACCACAGATGTGATCATATTGTGTTTGTATGTTGTTCA
GACAAGACCGCAGATGTGATGATATTCTCGTTGCATGTTGTTCAGACAAAACCACAGATGTGATCATATACTGGTTGTATCAGATGTGTG
ACCAATTACGTGCCTGTATTATTGATTACACATGATCCAAAACCATCACATCATGTTCACTTCAGCTACTGGAGAAGAAGTGAGAAGTAG
GAAATGCAATAATAAGAAAAACTTTGTAAAAGCTAATTTAGCTGGGTATGTTAATAGGGAGAAATGTGTAAACATTGTACTATAGATAGA
TAGTATACACAGGCATGATTTATTGCATTATGCACTGAATAGTATCTCAGCATCAAAGAAGAATTCCTTTTCGATTGTAAAAAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	7
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (44)

Alignment image suppressed for unigene with 44 aligned sequences.
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Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101775	Glycoside hydrolase starch-binding - Molecular Function: catalytic activity (GO:0003824) - Biological Process: carbohydrate metabolism (GO:0005975)	38
2	120285	Pyruvate phosphate dikinase PEP/pyruvate-binding - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310)	9
5	130569	Pyruvate phosphate dikinase PEP/pyruvate-binding - Molecular Function: ATP binding (GO:0005524) - Molecular Function: kinase activity (GO:0016301) - Biological Process: phosphorylation (GO:0016310)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U214108	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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