Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579580 in the current build, Tomato 200607 #2

Unigene SGN-U315292

Unigene Basic Information

Unigene ID:	SGN-U315292
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315292
mRNA sequence:	Length: 1829 bp

>SGN-U315292 Tomato 200607 #1 (26 members)
TCATACGATTTTTGTATTTTCCTAACATTTTTTCTGCAGCTTCGGAAACCCTAATTCCCCCCTCTGAGATTCTTCAAGTAACAGTAGAGC
TAAATATGGGAGAAAACAAGGAGAACGATGCTTATGAGGAGGAGCTTCTCGACTATGAAGAAGATGACGAAAAAATTCCTGATTCTACCA
CAAAAGTCAACGGCGAGTCGTCCAAAAAGGGTTACGTTGGGATTCACAGTTCAGGTTTCAGAGACTTTCTTCTAAAGCCAGAGTTGCTGC
GTGCTATTGTTGATTCTGGGTTTGAGCATCCGTCCGAAGTGCAACATGAGTGCATTCCGCAAGCTATTCTGGGTATGGATGTCATTTGCC
AAGCTAAATCTGGAATGGGAAAAACCGCTGTTTTTGTCCTTTCAACTCTGCAACAGATTGAACCAGTTGCTGGCCAAGTTGCTGCCCTTG
TTCTATGTCACACTAGGGAATTAGCTTATCAGATCTGTCATGAGTTTGAGAGGTTCAGCACTTATCTGCCTGATATAAAGGTTGCTGTTT
TCTATGGTGGTGTCAACATCAAGCTCCACAAAGAGCTGCTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATACTTG
CATTGGCAAGAGACAAGGACCTGTCTTTGAGGAATGTGAGGCATTTTATACTAGATGAATGTGACAAGATGCTTGAATCACTTGACATGA
GGAGAGACGTGCAGGAAATCTTCAAGATGACTCCTCATGACAAGCAAGTCATGATGTTTTCTGCAACTCTCAGCAAGGAGATTCGCCCGG
TTTGCAAGAAATTCATGCAAGATCCAATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTGCATGGACTTGTTCAGCACTACATCA
AATTGAGTGAGACGGAGAAAAACCGGAAGCTGAATGACCTATTGGATGCGTTGGACTTCAACCAAGTCGTAATTTTTGTCAAGAGTGTGA
GCAGAGCAGCAGAGTTGAACAAGTTACTTATGGAGTGTAATTTCCCATCTATCTGCATCCACTCCGGCATGAGTCAAGAAGAAAGACTGA
CACGCTACAAGGGTTTCAAGGAAGGGCACAAGAGAATTCTTGTGGCAACTGATTTGGTTGGTAGAGGCATAGACATTGAAAGGGTGAACA
TTGTTATTAACTATGATATGCCAGATTCTGCAGATACTTATCTTCACAGAGTGGGAAGAGCTGGTAGATTTGGAACTAAAGGGCTTGCCA
TAACTTTTGTGTCATCTGCATCAGATTCTGAAGTTCTTAATCAGGTTCAGGAGAGGTTTGAAGTGGATATTAAAGAACTTCCTGAGCAGA
TTGATACTTCTACATACATGCCATCTTAATGAGAATGAGGTCTTGCAAATGTGCCAGTTGTCTAGCTTGAAGACATGAAGTGGCAATAAG
GTTTCTGCTTTGTGTATCTACGTGGTTCTGAATTTGAGCTGATAAAATTTGAAGGATTGTGGAGACTTGTCTGCGTTGGCACTTTCTGGA
TTTGCTGTACCCTTAATGATTTCTATGCTGTTCCTGCATTAGCATGCAAATTTCTCAATGTTATGATATTTAGTATGAAGAGATGTTGCT
AATATCCACTAGAATTATTCTGCATTAGTTTCTTGTACTTGTGCTAGCTAATGTTATATAAGCCAGATTAGTGCTATTTTCCTCATAGGT
TGTGCCTGTGCAAAAGTCTTTTGTCAGCTTGTTGGAGGTCTGGTAACATCTCTGCTGCACTTGTAGAATATCAAAGGTTATAGACTTTTG
TCTTGGCTGGTGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTSB	seed	1880	2

mRNA member sequences (26)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	129951	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	14

Preceding Unigenes (1)

Unigene	Build
SGN-U214443	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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