Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571931 in the current build, Tomato 200607 #2

Unigene SGN-U315524

Unigene Basic Information

Unigene ID:	SGN-U315524
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315524
mRNA sequence:	Length: 2559 bp

>SGN-U315524 Tomato 200607 #1 (38 members)
GTTTCTTGAAAACCTTATCTCTTCAACACTCGCTCAAATTCTTCCTTCCTTCCTCTGCATAAACCCTAACAAAAACCCTAGCAAAACAAT
GGCTTTTCTCCCTTGTCCATTGAGATATAGCAAAATGAACAGTCTTTTTCTACTGAGGAAGTCTTCATCTTCACTAACATCAAAAAGGGT
GTCCATTAATTCCATTTCTCATATCTTCAGTGACAAATTTAGTCCCAGAAATGCCCTTCGAGTACCTCAAGTTCAAAGCTTTACCACTTC
TTTAACAGTATCAGCACCACCAATGAACAGGGTTGATGGTAAATTTGGGTATAGTGTTAAGGGATTTCATGGGGGTGGTTGTTGTTTGCA
GGCTGCAACAGCGACGGCAATGGCGATGGTGGAATTAGAAGAGGATTGTGAAGAAGGGCTTGAGATTTCGAAACTTGGGATTTCTGAGGA
AATTGTTTCAGCTTTGGCACAAAGGGGGATTACTAGTCTTTTTCCAATTCAGAGAGCTGTTTTGGAACCAGCAATGCAGGGGTCAGACAT
GATTGGCCGAGCTAGAACTGGAACTGGAAAGACACTTGCTTTTGGCATTCCTATCATGGATAAGATCATTCGCTTCAACAGAAAAAAGGG
ACGGGGAAGAAACCCTTTAGCATTGATCTTGGCTCCCACTAGAGAACTTGCGCGCCAGGTGGACAAGGAATTTTATGAGTCTGCTCCTAT
TCTGGATACTCTGTGTGTTTATGGTGGGGTTCCCATTTCACGCCAAATGAGTACTCTTGACAGGGGAACAGACATTGTTGTCGGGACACC
TGGTCGTATCATTGATTTGCTGAAGAGAGGGTCATTAAATTTATCAGATATCCAGTTTGTTGTTCTAGATGAAGCTGATCAGATGCTTAA
TGTGGGGTTCGCAGAGGATGTTGAAACCATTCTAGAAAATATTAGGCAGAAACATCAGACAATGATGTTTTCAGCCACGATGCCAAGTTG
GATATTGAAACTTACCAAGAAGTTCTTGAAGAAACCAATTCACGTTGATCTTGTAGGAGACTCTGACCAGAAATTAGCTGATGGCATTTC
TTTGTATTCAATTGCTTGTGAGATGCGTCAGAAACCGGCAGTTCTTGGACCCTTAATATCGGAGCATGCAAAAGGAGGCAAATGTATTGT
CTTCACTCAAACAAAGCGTGATGCTGATAGGCTGGCAGGTGCAATGCAAAGAACTTTGAGGTGTGAAGCTTTGCATGGAGATATCTCACA
AAGCCAGAGGGAGAGAACTCTATCTGGTTTCCGACAAGGTCAATTTAATGTATTGGTGGCCACCGATGTTGCTGCCCGAGGACTTGATGT
ACCTAATGTTGATCTGGTGATACATTACGAACTTCCGAATAATTCAGAGATCTTTGTTCATCGATCTGGTCGAACTGGACGTGCTGGTAA
GAAAGGAAGTGCCATTCTCATGCATTCCTCAAAACAGCATAGGGATGTAAAAGGTATTGAACATGATGCCGGATGCAGATTTACAGAGCT
CCCAACAATTAAAGTAGAGGCTGGAGCAGTAGAAATGTATAGTGAAATGGGAAAAGATGTTGGCCGCTTTGGTTCCTCTGGAGGAGGCAC
TATGCGTAGTCGATCTAGTGATTTTGGTGGAGGCCGTTCTGGTGGCTATGGAAATAAGAGCAGCAAGTTTGGTCGAGAAGTCTCTTCATC
TTCTGTTCGAACAGGTGGATATAGCGCAACTGGTTCAGGAAGATCAAGAGGTGGCTTTAGCGGAGCTAGCTCAGGCCGCTCAGGAAAGTT
TGGTGGTGGTTCAGGAGACACACGAGGCTCAAAACGTTTGGGTGGTTTCCGCAACTTTGGTGGTTTTGGAAGCTCCAAAAGTTCAAATCG
ATCGAATAATTTTGCAGAAGAGTTTGGTTCAGGCCGTTCTAGAAGATTCGGAGATTCAGATCATGATCGAAACAACCGTTCAAGCCGTTT
TGATGTCTTCGGAGATGACAATGATAGTGGTGAATGGTGATCAGAGTTGGAGGAGAACTATTTCTAACTCTGTTGCAAGGAGGCGTGGCC
ACTCAATAGATGATGGTGAAGATGAAACTCCGATATGTGAAGTGTGTATGTTTATTACCAGGTGCTGTAGAGTAGCAGCAGCTGCAGATG
GTGATGCTACGACTCGTTACAGTAGAAAATAACACTTCAACATCCACTTGGTCTCCAAAGGTACCTACACGCTATATGTAACCGATAGCT
ACCAAGTTCTCACCATTGCTGGCGTTATGTTTCTTCGCTGTATGCTTGAAATAAATATTTTTTTTGCAAGAGATCATATTGGTACTTGCT
AGTGATAGTGGTTGTAATGTTCAAGAGATCATATTGGTACTTGCTAGTGATAGTGGTTGTAATGTTCAGTATAAATTTTGAACAGACCTT
GATCTTATTATTTAACCAGTTTATGAGGATGTATTCAATTTGTTGAATCAAACAGGTGAAAAGGCTTATATTGAAAGTATATTGTTTTTC
TTTCGCACTTGTAAAAAAAAAAAAAAAAAAAAAAACTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	9
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (38)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	131107		8

Preceding Unigenes (2)

Unigene	Build
SGN-U217295	Lycopersicon Combined #3
SGN-U219774	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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