Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581075 in the current build, Tomato 200607 #2

Unigene SGN-U316055

Unigene Basic Information

Unigene ID:	SGN-U316055
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316055
mRNA sequence:	Length: 1480 bp

>SGN-U316055 Tomato 200607 #1 (24 members)
GGCAAAGAAGGCATGGTGTGTAACTCAACGAAGTATTCATCTAAGTGAGCGAAAAAATGGCTTCTCTAACACAGCAATTCGTTGGGTTGA
AGTGCCCTCCAATGTCGACAACAAGGCTTGTGAATCCGAGTAATTATCATCACCATCAGAGTAAGCAGAAGCCAAGAATTGTAATACAAG
CTGCAGCAGTAATCGCAAATGCACAAACAAGAGAAAGACTAAAACTTAAAGAGATGTTTGAGGATGCCTATGAGAGATGCCGCACTACAC
CTATGGAAGGTGTTGCCTTTACTGTTGATGATTTTCACTCTGCCCTTGAAAAATATGATTTTGACTCCGAAGTTGGTACTAAGGTCAAAG
GAACGGTTTTTTCTGTAGATGCAAATGGAGCTCTAGTTGACATAACTGCAAAATCATCTGCATACTTGCCTTTACGAGAAGCTTCACTTC
ACACCATCAGACATGTAGAGGAAGCCGGAATATTTCCTGGCTTGCGTGAGGAGTTTGTGGTAGTTGGAGAAAATGAAGCTGATGATAGTT
TGGTTTTGAGTTTGAGATCAATTCAATATGACCTTGCATGGGAGAGATGCAGGCAGCTTCAAGCTGAAGATGTTGTCATCAAAGGCAAGG
TGGTTGGTGCAAATAAAGGTGGAGTGGTCGCTCTGGTGGAGGGCCTTCGTGGTTTTGTTCCATTCTCCCAGATATCAACGAAATCAACTG
CGGAGGAGCTTTTGGAAAAAGAGCTTCCTCTGAAGTTTGTTGAGGTTGATGAAGAGCAATCGAGACTTGTTCTCAGCAATCGTAAGGCCA
TGGCTGATAGTCAGGCACAATTGGGCATAGGCTCAGTTGTTCTTGGAAGTGTTCAGAGCTTGAAACCATATGGTGCCTTCATTGACATTG
GTGGGATCAATGGCCTTCTTCATGTGAGCCAGATTAGTCATGATCGTGTCTCAGATATTGCAACAGTCCTCCAGCCTGGTGACACACTTA
AGGTCATGATATTGAGCCATGACCGTGAGAGAGGTCGAGTGAGCCTTTCTACAAAGAAGCTAGAGCCTACACCTGGTGACATGATTCGCA
ATCCAAAGCTTGTCTTTGAGAAGGCTGAAGAGATGGCCCAGACATTCAGGCAGAGAATTGCCCAAGCTGAAGCCATGGCCCGTGCAGATA
TGCTGAGATTCCAGCCTGAGAGTGGATTGACCCTCAACTCTGACGGGATTTTAGGTCCGCTGACCTCTGAACTACCTGAGGATGGACTGG
ACTTGAGTGAGATTCCACCAGCTGATGATTTATGAGTTCTAAATTAAAACCCGTCGTTTGACCCATTTGTTGCATAAGTTGTATAAATAA
ACATTGTTTGTAGGTTTAGGAACTAAGAATTGTACCCGCAGTCATTCTATTGTATTTTATCATATGATCCTCAACTACTTGACTTGCAGT
ATTGTTCTAAGAGAAGCAGCGCTAGCATCAGTAACTATCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (24)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101422	Agenet - Molecular Function: RNA binding (GO:0003723)	208
2	120052	Ribosomal protein S1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) RNA binding S1 - Molecular Function: RNA binding (GO:0003723) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	11
5	130338	Ribosomal protein S1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) RNA binding S1 - Molecular Function: RNA binding (GO:0003723) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	11

Preceding Unigenes (1)

Unigene	Build
SGN-U215933	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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