Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U564018 and SGN-U564021 in the current build, Tomato 200607 #2

Unigene SGN-U316101

Unigene Basic Information

Unigene ID:	SGN-U316101
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316101
mRNA sequence:	Length: 2087 bp

>SGN-U316101 Tomato 200607 #1 (29 members)
GAGAGAACTAGTCTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCAGCAATGGCGATGAAGAAAT
ATCTAATTCTCTCCATTTTTCTACTCAATCTCATCTTCTTCAGAACTGCTTTCTCTTCTGTTGTTGAAGAAGAAGAGGATCTCAGTTTCC
TTGAAGAAGAGGATTCCGATGCTCATTCAGATTCCAATCCATATGGTGACCACCACGATTTTGAGAACTACGAAGATCTCGAGGACGATT
CTTCCGATCACGGAGAAGACTCGTATGAGCCGCCAGCAGTGGATGAGAAGGATGTGGCTGTATTGAAGGAAGGGAATTTTAGTGAATTTA
TTTCGAAGAATAAGTATGTTATGGTTGAGTTCTATGCGCCGTGGTGTGGTCATTGTCAGGCACTTGCACCGGAGTATGCTGCAGCCGCGA
CTGAGCTGAAAGGAGAGAATGTGATGCTTGCTAAAGTAGATGCTACTGAGGAAGCTGAACTTGCTCAAAAGTATGATGTGCAAGGGTATC
CCACTGTTTTCTTCCTCATTGATGGTGTTCACAAGACCTATAATGGTGAAAGGAATAAGGATGCTATTATTTCATGGATAAAAAAGAAGA
CCGGGCCTGTTCTATCCAATATAACGACTGTAGAGGAGGCAGAACAAATCTTGAAAGATGAGAAAAAAGTAGTGTTGGGTTATTTGAATG
ATTTGGTGGGTGATAAAAGTGAAGAGCTTGCTGCAGCTGCTGCACTAGAAGATGATGTCAACTTCTATCAGACTGCCAATCCAGATGTGG
CAAAACTCTTCCATATTGATTCTCAAGCCCAACGTCCAGCTCTTGTCATAATTAAGAAAGAAGCCGAGAATATCAACCACTTTGATGGTG
AATTCACCAAGTCAGCAATAGCTAAGTTTGTTTTTGAGAACAAGCTTCCTCTTGTCACCAATTTTACTCGGGAAAGTGCCTCAGAGATAT
TTGAAAATCCCATTACGAAGCAGTTGATACTTTTTGCCACTTCGAAAGATTCAGAAAAATTCTTACCAATATTTCAAGAAGCTGTGAAAG
CTTTTAAAGGAAAGCTTATCTGTGTGTTTGTTGAAATCGACAACGAAGATGTTGGAAAACCAGTTTCAGAGTACTTTGGTGTTAGCGGTG
ATGCCCCAAGAGTTCTCGCATATACAGGAAATGAGGATGGGAGGAAGTTTATACTGGAAGGTGAAATAACCTTGGATGGTGTCAAGTCAT
TTGGGGAGAAGTTTTTGGAAGACAATTTAAAGCCTTTCTACAAATCTGATCCAATTCCTGAGACTAATGATGGGGATGTCAAAATTGTGG
TTGGCAATAACTTTGACGAAATTGTTTTGGATGAATCAAAAGATGTTCTTCTTGAGTTATATGCTCCTTGGTGTGGACATTGTCAATCAC
TAGAACCCATATACAACAAGCTTGGCAAGCATTTAAGAGGCATTGACTCCCTTGTTATTGCCAAGATGGATGGTACAACAAACGAGCATC
CCAGAGCCAAGTCTGATGGATTCCCAACACTTCTGTTCTTCCCAGCTGGCAACAAGAGCTTTGAACCTATTACTGTTGACACAGATCGTA
CAGTTGTTGCCTTTTACAAATTCCTGAAAAAGCATGCATCTACCCCGTTCAAGATTCAAAAGCCAGTCTCAACACAGAGAACTACAGAGT
CTGATGCCAGTTTAAGCCACGAGAGCACCACTAATGACGCTAAGGATGAACTGTGAGATATGTAGGTTCTAGCATATAAGTCAAGTTTGG
CTTTAGAAGAGAATGCAAAGCATATGGTTAAATGTGGAAGTGGAATATGATCACAACATCAGCATTGAAAATTTAGGTAGAGAATAGAAA
GTAGAAAGACACACCAAAAGGCTCTCTTTTGATGGTTGAATATTTTTACTTCTTTTTCTTTTTTGGTTGGCTGAAAATAAAATGTTTCGT
TGAATTTGCAAATTGACATGCCTTTTTCTTTACTTTGTTTTTGTTGTGGTATTTATGGAAGCAAGTTTTGCACTAGTTTGGATTGCAAAA
AAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOS	suspension cultures	8026	9

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101384	Thioredoxin-like fold	404
2	118534	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	61
5	129838	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Disulphide isomerase - Molecular Function: isomerase activity (GO:0016853) Thioredoxin domain Protein disulphide isomerase - Cellular Component: endoplasmic reticulum (GO:0005783) - Molecular Function: isomerase activity (GO:0016853) Thioredoxin-like fold	15

Preceding Unigenes (2)

Unigene	Build
SGN-U216778	Lycopersicon Combined #3
SGN-U217255	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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