Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564473 in the current build, Tomato 200607 #2

Unigene SGN-U316539

Unigene Basic Information

Unigene ID:	SGN-U316539
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316539
mRNA sequence:	Length: 2603 bp

>SGN-U316539 Tomato 200607 #1 (27 members)
TTTTTCTTTCTTTTCTTTTCTCTCTCTCTTTCTATAGTGTTGGTTTGTATGTTTCTTGAAGTTCCAACTTTACAGCTCAAAGTTCCATTT
TTCTATCTTTCTCTGTCTGGACCTTTTTTTTTGTTTTTTTTTTAAATTTTTTTTTTGAGTGTTAGCTGTGAAATGAACTTTGGGTACTCA
CTTGCAGATCGAATCTAGCATTTTCAGGGATCATTCTCTTTTCCATTGCTGGTTTTGTGGTGTCACATCCTGTTTACTGTATGTCCAAGG
GAACCGTAGCACAGCGTAGTCCGCCTGATGTTCTTCAGTAGCCTTATTATGCTTGATCAACGCCAAGATGGGCGACTTCTCTTCGAAAAT
TCAGGATTTGTTGTTTTTAAGCGTGCTGTTGCTTTGCATTTTCCCAAGACTTACACTAGCACTCAATCCTGATGGTCAAGCGCTTGTCAA
TTTTAGGATTGCAATATCTGGTTCCGATGGTGTTCTTGAGCAGTGGAGACCAGAAGATTCTGACCCATGTGGCTGGAAAGGGGTACAATG
TGACTCAAAATCAAAGAGAGTTACATCTTTAAGCCTCCCTAATCACAAACTGAGTGGATATATATCACCAGATATTGGGAAGCTAGACCA
GTTGCAGTTTCTGGCTCTTCATGACAATAATTTCTATGGGGCAATACCTCCTGCATTGGGAAATTGTACAAACCTGAAATCTCTGTTTCT
TCAGAGTAATTATTTAAGCGGATGGATTCCTGATGAGTTGGGAAACCTTCCTGAGCTTGAGAATCTAGATCTTTCAAGCAACTCTCTCAG
TGGAAACATTCCACCATCCCTTGGCAAGCTGAACAATCTTGGCATTTTCAACGTGTCAACAAATTTCTTGGTTGGGCAGATACCTTCAGA
TGGACACCTTGCCAAGTTTGGAAATGATTCCTTTCTTGGAAATCGTAACTTGTGTGGCAAACAAGTTAGTCAGGACTGTAACAATGGAGG
TCCTTCAATATCCCCGTCCCCGGGTTCAGCCCAAAGCCAAAATAAGAATGGTCGACTACTTATAAGTGCATCTGCCACTGTGGGTGCACT
GCTTTTGGTGGCACTGATGTGTTTCTGGGGCTGTTTCCTCTACAAGAGACTGGGTAAAAATGATGGCAAAAGTCTTGCGATGGATATTTG
TGCAGGTGCATCGATTGTGATGTTCCATGGAGATTTACCCTACTCTTCCAAGGACATCATCAAAAAACTGGAGATTCTGAATGAAGAGCA
CATTATTGGTTCTGGGGGCTTTGGAACTGTATACAAACTTGCAATGGATGATGGCAATGTATTTGCCGTGAAGAGAATTATCAAGATGAA
TGAAGGCTTCGATAGATTCTTCGAAAGGGAGCTTGAAATTCTTGGAAGTATTAAGCACCGGTATCTGGTAAATCTGCGAGGATATTGCAA
TTCTCCGACATCAAAGTTGTTGATATATGACTTTTTATCAGGAGGTAGCCTAGATGAAGTTCTGCACGAGAGATCTGAGCAGTTAGACTG
GGGTGCACGGCTGACTGTAATCATGGGAGCTGCAAAAGGGCTGGCATATTTACATCACGATTGTTCACCTCGAGTAATACACCGTGACAT
AAAGTCTAGCAACATTTTGCTTGATGGAAACTTTGAGGCTCGAGTATCTGATTTTGGACTGGCCAAATTACTCGGGGATGAGGAGTCTCA
CATCACAACAATTGTAGCTGGCACATTTGGGTATTTAGCTCCAGAATACATGCAGAGTGGTAGGGCTACAGAAAAGACAGATGTTTATAG
TTTTGGAGTTCTGGTTCTTGAAGTCATAAGTGGGAAGCGGCCGACTGATGCATCATATATTGAGAAGGGCTTCAATATTGTAGGCTGGCT
GAATTATTTAGCATCCGAGAATAGACGGACAGAGATAGTTGATCCGCTTTGTGAACGAGTGCAGACTGAAAGCCTTGATTCCCTGCTTTC
AGTTGCCACTCAGTGTGTTTCTTCAAGCCCCGACGACAGGCCCACAATGCACAGGGTTGTTCAGATTCTCGAATCTGAAGTCATGACTCC
ATGTCCCAGTGACTTCTACGATTCAAGCTCGGATTGAAGGCTCTAGCTAGATGTGAAGAAAATTAATGATTTGAGTTTGCATCTGCAACT
TCATGCAGTAAATTGAGGAGTGATGCAAGTTTATGGGAATTAAAGTCTGCAAAGATTCTTCTATTGTACTATATTTATCGATTCTTTCTG
CAGATGAACAACGAAAAAAGATCAGTTCAACTGCCATCATTCCTCAAATTCAGAGTTGCTAGCTAGTTATCACGAGGTTCATTGTGCTTA
ATCCTGTTTTTGATTTCATCATATTTCTCCAGTGCATTGAGCTTTTCATTTCACCAGGGGAACGGAATGTGTACGAGTGGCATGAGCAAT
CAAATCTCTTTTGTATCTTTCATTTGCCTTTTGTTTGTAGGTTTTCTTGCTGTAATTGTATATGGAAATGATTGAATTGATATGACACTT
GCCTTTTGCTAAGTTGATATCCTTTTTGTATATTATGATGCTTCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (27)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (1)

Expression Data (3)

Annotations (manual: 3 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128926	Leucine-rich repeat	647

Preceding Unigenes (2)

Unigene	Build
SGN-U218093	Lycopersicon Combined #3
SGN-U218567	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Description:
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