Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577326, SGN-U578400, and SGN-U581292 in the current build, Tomato 200607 #2

Unigene SGN-U316970

Unigene Basic Information

Unigene ID:	SGN-U316970
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316970
mRNA sequence:	Length: 1584 bp

>SGN-U316970 Tomato 200607 #1 (22 members)
TTCTTGATGAAGTCGATGAAATGTTAAAAATTGGTTTTGTAGATGATGTCGAATTTATTTTAGGCAAGGTCGAAGATGCAAGCCTAGTTC
AAACAGTTCTTTTCAGTGCCACTTTGCCAGTCTGGGTGAAGCATATTGCTTCTAAGTTTCTGAAACCAGATAAGAAAACGGCTGACCTTG
TTGGTAATGAGAAAATGAAGGCCAGTAAAAATGTGAGGCATATTATTATTCCATGCTCTAGTTCTGCAAGACCTCAGCTTATTCCTGATA
TCATTCGGTGCTACGGCAGTGGAGGACGTACAATTATTTTTACTGAGACAAGGGCGCTGGCTTCAGAGCTAGCTGGCTTACTGCCTGGGG
CAAGTGCTTTGCATGGGGAGATACAACAGAACCAGCGTGAGGCTACACTTAAAGGATTCAGATCAGGCAAATTCATGACATTAGTGGCCA
CAAATGTGGCAGCCCGTGGATTGGATATCGATGATGTTCAGTTAATTATCCAGTGCGAAGCCACTAGTGACGTGGAAGCATACATTCATC
GATCTGGAAGGACAGGACGGGCTGGAAAGAGTGGCGTTGCTGTAATGCTGTATGATCCAAGGAAGTCAAACATTTCTAGAATCGAAAAAG
AATCTGGTGTGACCTTTGAGCATTTGTCTGCTCCTCAGCCAGCTGATGTTGCCAAGGCAGCTGGGAAAGAAGCTGCTGATATAATTGCGG
ATATTTCTGATAGTGTCATACCTGTATTTAAGGCTGCTGCAGAGGAGCTTCTGAATACTTCTGACCTATCACCAGCAGAATTACTTGCGA
AAGCTCTTGCCAAGGCTGCTGGCTATTCTGAGATCAAGACTCGATCGCTTCTTACTTCTATGGAGAACTGTGTTACTCTGCTTCTCGAGT
GTGGGAGACCCATCTTCTCACCTTCCTTTGTCTATAGTGTCCTGAGGAGGTTCTTGCCTGAGGAGAAGGTTGAATCAATCAATGGTCTTA
CTTTGACAGCTGATGGAAAGGGGGCAGTTTTTGATGTTGCTGCTGAGCACTTGGATGAATTTCTCTCAGGCCAAAAAACTGCACATGGGG
TAAATATAGAGGTTGTGGAAGCGCTGCCTCCTTTGCAAGAGAGAGAGAAGCCAAGAGGTGGAAGATTTGGAGGTGGTGGCCGTGGCGGCG
GCTTCGGTAACAGAAGAGGCGGAGGTGGCTTTTCTGGAGGAAGAGGGGGGAGAGGTAATGGCAACTTTGGTCGCAGATGGTAAGGAATGG
CGACATAATTTTTTTGATAGCTGACAATACAAGAGTTTGTCCAAGGCTGCGTTCAAAATTTTGGTATAGTGAAGAAAATGTATGGGACTT
CAGTAAGGTTTCTTCTGTATTAATTTTACTAATTTATATAGGTTTCTCCTCCCTGTACCCTGCTTCATTATGCTTTTCGCTAGTTAGCTT
TCTTGTAGTGTTCTTCCATGTTTTACTATATTTTTGGTTAGACACTTGAAAAGTTATTATTTATTTTGTATGGTATTGTTACCTGAAGAA
ATCATATTCAATTCAAGTTCAATTTACTAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101393	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	340
2	118423	Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	248
5	130340	ATP-dependent helicase DEAD-box - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) GUCT - Molecular Function: RNA binding (GO:0003723) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: nucleus (GO:0005634) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATP-dependent helicase activity (GO:0008026)	11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U218063	Lycopersicon Combined #3
SGN-U224439	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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