Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566163 in the current build, Tomato 200607 #2

Unigene SGN-U317239

Unigene Basic Information

Unigene ID:	SGN-U317239
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317239
mRNA sequence:	Length: 1201 bp

>SGN-U317239 Tomato 200607 #1 (21 members)
GACAGTTCACGCGAATTGGTTTCAACATTTTCCCGAGAAAATTTCAATTATGAATATCTTCTCGCAGATCTTCACTTTCTTCTTCTTCTT
GATCGTTGTGTTCGTTACAAAATCATCATGCTCAGCAATCATCAATCCCTCTAAAGTCAAGCAAATTTCATGGAAACCTAGAGCTTTTGT
GTATGAAGGTTTTCTTACGGACGAAGAATGTAATCATTTGATATCTCTTGCGAAAAAAGAGTTGAAGAGATCAGCTGTTGCAGATAATGA
ATCTGGGGAAAGTAAGCTTAGTGAGGTCAGGACTAGCTCCGGAATGTTCATTAGCAAAGCAAAGGATCCTATTGTCACAGGGATAGAGGA
GAAGATAGCGACTTGGACTTTTCTACCTAAAGAGAATGGAGAAGACATACAAGTTCTAAGATATGAGGAAGGACAGAGATATGAGCCACA
CTATGATTACTTCACCGACAAGGTTAATATTGTTCGTGGTGGACACCGTTTAGCCACTGTACTCATGTATCTCAGTGATGTAGAGAAAGG
TGGTGAAACTGTTTTCCCCGAAGCAGAGGTATCAACTCGGCGTAGGTCAATGGCAGCTGACGACAGTTTGTCCGAGTGTGCAAAGAGGGG
TATTGCTGTTAAACCACGAAAAGGAGATGCACTTCTTTTTTTCAGTCTCCATCCAAATGCTGTACCTGATCCTATGAGCCTCCACGGTGG
ATGCCCTGTTATGGAGGGTGAGAAGTGGTCAGCAACCAAGTGGATTCATGTGGATTCATTTGACAAAACAGTGGATTCTGAAGGAGGACA
TTGTGCTGATCATAACGAGAATTGTGAGAGATGGGCTGCACTTGGGGAATGCACCAAGAACCCAGAATATATGGTTGGAAGTACAGACCT
CCCAGGAAGCTGTAGAAAGAGCTGCAAATCTTGTTAACTTGTTTCTTCCACTTGAATCAGTTCAAAAACACACTAGTTCTTTCTCTTTTT
CGTTTGTTTGTCTCGTGTTTTTTCAGATGATATCATCTGTCGGGTCGTGTTCTTGCTATTTTACTCAATTTTGCAAGTAATCTTGTACTA
TTTTCTTTCTTCTTTGTGGGTGTATATGTAAAACATTACGAGACTCTAATTAGGTTTTGCAGTTACCATCTAATACAAAAAAAAAAAAAG
TTTATTTAGGGCAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2

mRNA member sequences (21)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (5)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101726	Prolyl 4-hydroxylase alpha subunit - Molecular Function: oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors (GO:0016706) - Biological Process: protein metabolism (GO:0019538)	43
2	118645	Prolyl 4-hydroxylase alpha subunit - Molecular Function: oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors (GO:0016706) - Biological Process: protein metabolism (GO:0019538)	40
5	129157	Prolyl 4-hydroxylase alpha subunit - Molecular Function: oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen 2-oxoglutarate as one donor and incorporation of one atom each of oxygen into both donors (GO:0016706) - Biological Process: protein metabolism (GO:0019538)	35

Preceding Unigenes (1)

Unigene	Build
SGN-U215883	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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