Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577718 in the current build, Tomato 200607 #2

Unigene SGN-U317267

Unigene Basic Information

Unigene ID:	SGN-U317267
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317267
mRNA sequence:	Length: 1864 bp

>SGN-U317267 Tomato 200607 #1 (22 members)
AAAATAAAAAAATTGAATATAATATATCCTGGTTTCCATTATTTGAAAAGGGGAAAAAATAATAAAGAAAAAGATTTATCTTTTGGTTGA
TCAGAAAAATTTTCACAATATCGGAATTGAAATCTAATTTCACCAATAATTTTGGGGCACATCAAATCAAAGTCTGCTTCGATTAACGCA
AAACCCTAGAGGGAATTTATCAAGATGATCCCAGTTTGCCCTTTTGCTGGAGCTTCCAGACCCGATGATGCAACTCTTAATAAACCATAT
GACGAAAATAAACAACAGGCTCAAGAGAGCAAGCCTAAAAAAGAATCTGGAGAAGTTGCTACGGTGTCACCTAAATGCCCCTTTGGATAT
GATTCAACTCTTAAGAAACCTTGTGACGACCAAAATAAACAACAGGATGGCCAGGAGAGCAAGCCTAAACAAGACTCTGGAGAATCTGCA
ACTGTGTCACCTAAGTGCCCCTTTGGATATGATGGCCAGGAGAGCAAGCCTAAACAAGACTCTGGAGAATCTGCAACCGTGTCACCTAAG
TGCCCCTTCGGATATGATGGCCAGAAGAGCAAGCCTAAACAAGACTCTGGAGAATCTGCGACAATGTCACCTAAGTGCCCCTTTGGTTAT
GATTCTCAAGCATTTAAACTGGGTCCTTTTAGCTGCATGATATGTCAAGCACTTCTTTATGAGAGCAGCAGATGTGTGCCCTGTTCACAT
GTATTCTGCAAGGCATGTCTCTCCCGCTTTAAGGACTGTCCATTGTGTGGTGCTGATATTGAAAAGATTGAGGCCGATATGAATCTTCAG
AATGTTGTCGATCGCTTTATTGAAGGGCATGCAAGGATTAAGAGGTCTAATAATGAGCAAGAAGATATAGTGGAAAAGAAAACTGTTATA
TACGAGGATGCATCTTTGGAGCGTGGAGCTTTCCTGGTTCAACAAGCCATGCGGGCTTTTCGTGCCAATAATATTGATAGTGCAAAATCA
AGATTTACTATGTGTGCAGATGACATCAGAGAACAGCTTCAGAGAATGGGGAATACATCAGAGTTGTGCTCACAGCTCGGAGCAGTTCTT
GGTATGCTTGGTGACTGCAGTCGAGCTACAGGAGATGCTGTATCTGCAGTCGCTTACTTTGAAGAGAGTGTCAATTTCCTTTTGAAAGTA
CCCAAAGATGATGTAGAGATCACACATACACTTTCTGTTTCACTAAACAAAATTGGAGATCTTAAATACTATGCCGGTGATTTGCAAACT
GCCAGATCTCATTATTTTCGGGCGTTGGATGTTCGCCGCAATGCCATCAAGCAACAGTCTGTGCCATCTCAGGTAGTCGATGTAGCCATT
TCCTTAGCCAAAGTTGCTGATATCGATCGAAATCTCGGGGATGAGGATACTGCAGTTGAAGGATTTCAAGAAGGCATAAAGTTACTGCAA
TCCCTTGAACTAAAACCCGAAGAAGTTAGCCTTGAACAACGGCGGCAATCAGTGCTCGAGTTCCTCAACAGCCAACTTGAAAAGAACGAA
ACTTAACTCAGCTGCCCGAATGAAGTCCTTTCCTACATAGTTAAGGACGAATAAGAACAATGTGTGTTCTCTCATATAGTTTGGTGTAAA
CACTAGATGCTCGGTTCAGAGGCAACCTGAGATAAACTTCGATGTAATCGCCGTAGAATAAGTGAGATTTTTAATAGTAATATGCCTGTG
GCAAAGTCAATATAGTCCTATGTTCCAAAATCTCAGTATCTTGTGTATGTATCTTTACCACAAGTTGACAATATTATTAAGTTATTGGAG
GTTTATGACAATGTTATAAAAGTATAATGTGTGCTTCTCAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (22)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	104436	Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488) Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	4
2	123565	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488)	4
5	133739	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) Tetratricopeptide-like helical - Molecular Function: binding (GO:0005488)	4

Preceding Unigenes (1)

Unigene	Build
SGN-U215953	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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