Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566475 in the current build, Tomato 200607 #2

Unigene SGN-U317287

Unigene Basic Information

Unigene ID:	SGN-U317287
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317287
mRNA sequence:	Length: 2448 bp

>SGN-U317287 Tomato 200607 #1 (22 members)
GGCGATTGGCGGCCAATCGGCCGAATTGCTTTCGCCTTCACTCTCGAGCTCCTTCAAACGCAGTAGAAGCTGAAAATGACGCTTGGAGAA
AGGCAAGGAGATGAGAAAAATGACTCAAAGTACTGCGGAGTTGAAACGGAGTTCAATGATGACATGCCTCAACTTCTCTCCCTCAACATT
CATGGAGGATTCGACTTTGTTGTCGCACCATTGATGGATCCTGCTTACAGGCCTAGTTTACTGGTGAGTAGCAATGGTGGATCTGGGGTT
CTTCCATTCGCTGGGTCAGACTTGGTGCTAAGCCCTTCCCAATGGAGTAGTCATGTTGTTGGTAAAATTAGCTCATGGCTTGACTTGGAT
TCTGAGGATGAAATGTTTCGGAGGGATTCTGAGATTACTTTGAAACAAGAAATAGCCTGGGCTTCTCACCTTTCACTGCAGGCCTGTCTT
CTTCCTGCACCCAAGGGAGTGACCTGTGCTAATTATGCTAGATGTGTGAATCAAATTCTACAGAATCTAAGCAATATGCAGTTGTGGCTA
AGAATTCCATTGGAGAAATCTGATGATGATGAAGATAGAAGTCCTAACTCTATGGGTGAAGAACATAGAGATTCATGGGAAATGTGGAAC
TCATTCCGCACTCTCGGTGAACATCACAGTCAGCTTTCAGTTGCACTTGATGTTTTATCCTCATTACCCTCTGTGAATTCACTTGCGCGG
TGGTTTGGGGAGCCTGTTAGAGCTGCTATAATTAATTCCAATTCTTTTCTCACCAATGCCCGTGGCTACCCCTGTTTGTCAAAACGACAC
CAAAATCTATTGACGGATTTTTTCAATCACTCAATTCAGATAGTCATCTCTGGACAGCAAATGCAGAATTTCCCCACGGGAACTTCAGTG
TCAAATTCTCACAGTAGTAATAATCAAAGTGAGGGTGTTGAGGGCATGCAGCGACATCCGCTAAGGTCATACCTGGACTACATTGCTTAT
TTATACCAGAAGATGGATCCACTTCCTGAACAAGAACGCTTTGAGCTTGGTTATAGGGATTACTTACAGTCTCCCTTACAGCCTCTCATG
GACAATTTGGAGGCCCAAACTTATGAAACATTTGAGAAAGATACGACCAAGTACATACAGTATCAAAGAGCAGTTGCGAAAGCTTTAGTG
GACAGGGTTCCAGATGAAAAGGCATCTACAATCACTACTGTCTTGATGGTTGTTGGGGCTGGACGTGGGCCTCTTGTCAGAGCTTCATTG
CAGGCTGCTGAAGAGACTGGACGCAAGTTGAAAGTTTATGCTGTCGAGAAAAATCCAAATGCAATCGTCACCCTACATAGCTTACTAAAG
ATTGAGGGCTGGGAAAAACTTGTCACCATAGTTTCAAGTGACATGCGCTGCTGGGATGCTCCTGAGAAAGCTGATATTTTGGTTAGTGAA
TTGCTTGGGTCATTTGGAGACAATGAGCTGTCACCTGAGTGTCTTGATGGTGCTCAAAGATTCCTGAAAGAAGACGGAATTTCAATTCCA
TCATCGTATACAAGTTTTTTCCAGCCTGTGACTGCTTCCAAATTATACAATGATATCAAATCTCACAAAGATCTTGTGCACTTCGAAACT
GCTTATGTTGTCAAGTTCCACCGTGTAGCAAGGCTTACTTCTCCTCAACCAGTCTTTACATTCAATCATCCGGAGGACTCAAATAGGAAA
AGCAATCACCGGTATACAAAGCTACGATTTGAGATACCCACTGACACTGGATCAGCCCTGGTTCATGGTTTTGCTGGTTATTTTGATGCT
GTACTTTACAAAGATGTTCATCTTGGTATTGAACCATCAACAGCAACACCTAACATGTTCAGCTGGTTCCCTATATTTTTCCCATTGCGA
ACACCTATGTGTGTTCAACCGGGTATTCCTCTAGAAGTTCATATTTGGCGTTGTTGTGGTATTTCAAAGGTTTGGTACGAGTGGGGCGTG
ACTTCTCCCAGCTCATCTCCTATACACAACTGCAATGGTCGCTCATACTGGGTTGGATTGTAAGAGTTTCTTCAGTGTGTTTTGAGCTTT
CGAGATAGCATGACGTGATATTGAACTTCAAATGGGTAACAAGTCTAATGTTACTTGTTAAAACTGTCGTAATCATGGCTTCATATCGCT
CATCTTTCGACTCCAACTGGTGCTCAACATGCCAAATTGATTGTCTGTGCACTTCATGGTGCTTTAAATTTTTTCAGTAGAAATTTTGTA
GAGTTTAGGTTCAGATAAACCTTAAAACTGCTGTAGTAAAAATAATCCTTTTCTTTTATTGAATGAATGTAGTTTGGTTTGTGCTAAAAA
AAAAAAAAAATTTTTTTTTTATGTAAAATCCTACAACATATTGTCGGTCATCACCATTATTGATCATCATTTAAAAATTTTGAGATATTT
TGTTGATAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101752	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	40
2	122611	Skb1 methyltransferase - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: methyltransferase activity (GO:0008168)	5
5	132806	Skb1 methyltransferase - Cellular Component: cytoplasm (GO:0005737) - Molecular Function: methyltransferase activity (GO:0008168)	5

Preceding Unigenes (2)

Unigene	Build
SGN-U217946	Lycopersicon Combined #3
SGN-U221875	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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