Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U562982 in the current build, Tomato 200607 #2

Unigene SGN-U317454

Unigene Basic Information

Unigene ID:	SGN-U317454
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317454
mRNA sequence:	Length: 1337 bp

>SGN-U317454 Tomato 200607 #1 (21 members)
ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTAT
TTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTA
ACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGAGGAA
GTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTT
CTTTTTATCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATA
CTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAA
AAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAA
ATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAG
CGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTC
GAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGT
ACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAAATATTAAATT
GTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAA
GCGTCCAAGGTGTTCCTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGA
GTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGT
GTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
xth6	xyloglucan endotransglucosylase-hydrolase 6

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	6
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (21)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (3)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101462	Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Concanavalin A-like lectin/glucanase	129
2	118454	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122
5	128954	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122

Preceding Unigenes (1)

Unigene	Build
SGN-U215860	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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