Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U572848 and SGN-U572850 in the current build, Tomato 200607 #2

Unigene SGN-U317729

Unigene Basic Information

Unigene ID:	SGN-U317729
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317729
mRNA sequence:	Length: 1558 bp

>SGN-U317729 Tomato 200607 #1 (13 members)
GGAGTCCCCATTTCCCCATAACAACCAAGAAAAAGTTGAAGTGCTTCATCTTCTCAGTTCAATAATCAATTGGTGAAGTTGGATTATAAT
TGCTCTCCATGTCTGTTGAACGAACTTTCAAGAAGCTAGTTTCTGGTGTCATCCTTGATTTGGATGGTACACTTCTTAATACAGATGGCA
TTGTGAGTGAGATTTTAAAGGTTTTCTTAGTTAAGTATGGAAAGCAATGGGATGGGAGAGAAGCTCCCCACATAGTAGGGAAAACCCCAA
CAGAAGCTGCTGCTGCCGTTGTTGAAGATTATGGGCTGCCACTGTCAAGAGATGAATTTCTTTCGCAATTTTACCCAATGCTGTCTGATC
AGTGGCGCAATATCAAAGCTCTTCCAGGGGCCAATCGATTGATTAACCATTTGAGCGGTCATGGTGTACCCATGGCATTGGCGTCAAATT
CTTCTAAATCTAACATTGAGGCCAAAATTTTTCATCATGCAGGATGGAAAGAGTCCTTCTCAGCTATTGTTGGAGGAGATGAAGTGAAAG
CTGGAAAGCCGTCTCCGGAAATATTTCTTGAAGCAGCTAAAAGACTCAACATGGATCCATCCAGCTTTCTTGTCATTGAAGATTCAATAC
CAGGTGTTACTGCTGGTAAAGATGCTGGAATGGCAGTAGTTGCTGTACCATCTCTTGCAAAGCAGTCTCATCTTTATACCTCTGCTGATG
AAGTGATCAATTCTCTTCTAGATTTGCAACTAGAAAAGTGGGGACTACCTGCATTTCAAGATAGGATAGAAGGTACTTTGCCTTTAGAAC
CTTGGTATATAGGTGGTCCTGTCATTAAGGGATTTGGGCGCGGCTCAAAGGTTCTCGGGATCCCCACAGCTAATTTATCCCCACAAGGTT
ATTCAGCCATTCTTTCAGAACATCCAGCGGGTGTATATTTTGGATGGGCAGGACTATCAGGTCGAGGTGTCTACAAGATGGTCATGAGCA
TTGGTTGGAATCCTTTCTTCAACAATACAGAGAAGACGGTTGAACCATGGTTGCTTCATGACTTCAATGAGGACTTCTATGGTGAGGAAT
TGCATCTAGTTGTTGTGGGCTACATACGGCCGGAGGCCAACTTTTCGTCACTTGAAGCCTTGATAGCAAAAATTCACGAGGACAGGAAGA
TTGCAGAAAGAGCTCTCGAACTTCCTCAATACTTGAAGTACAAGGACGATCCATACCTTAAAAGTTCTCTGCATCAACAAAATTGATCAT
TGAAGTGTTGAAGTTCATTATTGTTCTGATTGGGATTGTATCTGTTTATTCTGTCCTAATTCCTCAGACTACAATAGTCTCCCCATCAAA
ATGCTCTATACAATAAAAAGATAAAAAGAATTTGAATGTATAGCTATTCAGAAGTTAAAGAACCTTCCAGGGGGTATTAGTGAATGGCAA
AGGGTTCAAGTGCAGGATCTTTGTACTGAGAATTTCAAGTTCCTGTGTAAATGTTGATTAATGTAACTTGTTTTCTATCTGTTTATAATA
TGGAAACATGCAAGCTGATGCAGATTGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (13)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	121227	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Haloacid dehalogenase/epoxide hydrolase - Biological Process: metabolism (GO:0008152) - Molecular Function: hydrolase activity (GO:0016787) HAD-superfamily hydrolase subfamily IA variant 3 Riboflavin kinase / FAD synthetase - Molecular Function: riboflavin kinase activity (GO:0008531) - Biological Process: riboflavin biosynthesis (GO:0009231)	7
5	132772	Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Haloacid dehalogenase/epoxide hydrolase - Biological Process: metabolism (GO:0008152) - Molecular Function: hydrolase activity (GO:0016787) HAD-superfamily hydrolase subfamily IA variant 3 Riboflavin kinase / FAD synthetase - Molecular Function: riboflavin kinase activity (GO:0008531) - Biological Process: riboflavin biosynthesis (GO:0009231)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U218094	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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