Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U563999, SGN-U564004, SGN-U564012, and SGN-U586643 in the current build, Tomato 200607 #2

Unigene SGN-U318192

Unigene Basic Information

Unigene ID:	SGN-U318192
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318192
mRNA sequence:	Length: 2107 bp

>SGN-U318192 Tomato 200607 #1 (16 members)
TCGGATCTCTCTTCAGTAATAGAAATCTCATCGATCTCAGTCAACTCGTCACTGACTCACAAAATGACCAGTCGACTCATTCTTCTCCTT
TTTCTCTCTTCCCTCCTCATCTTCTCCGTCCTACTCACTCCATCACTCGCCGGCACCGGCGCCGATGACGACGACGACGAAGATCTCAGC
TTCCTCGAAGCAGACGACGTAAACGACGCCGCGCCGGAGCACACTTTCCCAACCGAAACCTTCTCTGACGACGACGACTTCGACGACGAC
GAGGACTTCGAAAATTACGACGATTTTGAAGTTCCGTCGGCGTTTGATGACGAGAAGGAAGAGGAAGGTGTTAAATTCGACGATAAAGAC
GTCGTCGTTTTGACGGATAGGAATTTCAGTGACTTTGTAGAGGATAATAAGTATGTGATGGTGGAGTTTTACGCGCCGTGGTGTGGTCAT
TGTAAGGAACTTGCACCGGAGTACGCAGCTGCAGCGACGGAGCTGAAATCGGAGAATGTGCCGCTGGTTAAAGTTGATGCTACGGTGGAG
AATGAGCTAGCGGAGAGTTATGAGGTTCAAGGATTTCCTACTATTTATTTTTTTGTTGATGGTGAGCATAAAACTTACAGTGGCCAAAGA
ACCAAAGATGCAATTGTGACTTGGATCAAGAAGAAGATTGGACCTGGCGTTTACAATATAACTACAACAGAGGACGCAGAGCGTGTACTA
ACGTCTGGAGACAAAGTCGTGTTAGGGTTCCTTGAGTCCTTGGTGGGTCCTGAAACTGATCAACTTGCTGCTGCTTCAAAACTTGAGGAT
GATCTTAACTTTTACCAGACGACAAATCCTAACGTGGCTAAGCTATTCAATGTTGAAGACACTGTTAAACGCCCAGCTTTAGTCTTGCTT
AAAAAAGAAGAGGAGAAAGTGGTGCATTATGATGGTCAATTCACCAAGTCTGCAATAGTTAAGTTTGTATCTGCCAACAAGCTTCCTCTA
GTAACAGTTTTTACTAGAGAAAGTGGAGCTTCGATTTTCTCGAGTCCTATAAAGAAGCAGGTTTTGCTCTTTGCCCGAACAAATGATACA
GATAAAGTATTCCCAACATTTCAAGAAGCTGCAAAACATTTTAAGGGAAAGCTTATCTTTGTTTTTGTCAACATGGATGATGAAGAAGTT
GGAAAGCCTGTGTCAGATTATTTTGGAGCCACCGGAGATTCTCCAAAGGTTATCGGATATACAGGAAACGAGAATCCTAGGAAATACATA
TTTGATGGGGAGATCACTGTTGAGAAGCTTAAGGCATTTGGAGAAGATTTTCTGGCTGACAAGCTCAAAGCTTTTTATAAATCAGACCCT
ATTCCTGAGGATAATGAGGGGGACGTGAAGATAGTAGTGGGGAACAATTTTGATGACATTGTTCTGGATGAGTCAAAAGATGTGCTTCTG
GAGATATATGCACCATGGTGTGGGCATTGCCAATCTCTAGAACCAACGTATAACAAGCTTGCAAAGCACTTACGTGGCATTGAGTCTCTT
GTTATAGCCAAAATGGATGGTACCACGAATAAGCACCCTCAGGGAAAGGCTGAAGGATTTCCCACACTCCTCTTCTTGCCAGCAGGGAAC
AAGACCGCGGATCCAATCCCAGTTGATTCTGACCGAACTGTAGTGGCATTGTACAAGTTTATCAAGAAACACGCAACTATTCCTTTCAAG
CTTCAAAAACCAGCTTCATCGACAACTACATCAGAGAGTCCGGAAGCCAAAGTAGGTGGCAACGTTGAGTCGAAGAATGAAAAAGATGAA
CTATGAAAGTTACATAGCTCTGTTACTTTATCTTCTCTGTTATTCTTCTAGCTAGCTTGTTTTGTAGTAGGAGTAGATAGACTGGGCTAC
GAAGATGGCCATGGAACATATTTTGTTATTTCTTTTTTGCTTTGAGTTTAAAGTTTAATGTCCTTCTATGAATGATAAGTTATATATATG
TCTTAATTTCTATATCATTAGGTTATTTTTACTTGCTGTAGTAGCAAATGTACCAAAAACATTACAAGTATGAATGTAATTTTATCTCAA
TCTAATTGAAGTTTGTGTAGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101384	Thioredoxin-like fold	404
2	118534	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	61
5	129838	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Disulphide isomerase - Molecular Function: isomerase activity (GO:0016853) Thioredoxin domain Protein disulphide isomerase - Cellular Component: endoplasmic reticulum (GO:0005783) - Molecular Function: isomerase activity (GO:0016853) Thioredoxin-like fold	15

Preceding Unigenes (1)

Unigene	Build
SGN-U216328	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
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Event Web URL:

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