Sol Genomics Network

Unigene SGN-U578090

Unigene Basic Information

Unigene ID:	SGN-U578090
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1572 bp

>SGN-U578090 Tomato 200607 #2 (217 members)
GGCGATTGGCGGCCAATCGGCCGAATTCTCTCTCCCTTTTCCTCCATACTCGAACAAGCCAACAAACTCTTCTTCTCGCCGCGCTTTATC
ATCGTTCAATTTTGACTAAATTAAGCGATCGAAGATGTTTGGGAGGGCACCGAAAAAGAGCGACAACACGAAGTACTATGAAATCTTAGG
TGTTCCTAAAACTGCTGCACAAGAAGATCTCAAGAAAGCTTACCGTAAAGCTGCTATTAAGAATCATCCTGATAAGGGAGGTGATCCTGA
AAAGTTTAAAGAGCTTGCACAAGCTTATGAGGTTCTGAGTGATCCCGAGAAGCGTGAGATATATGATCAGTATGGAGAAGATGCTCTCAA
GGAAGGAATGGGCGGTGGAGGTGGTGGACACGACCCATTTGATATTTTCTCATCTTTCTTTGGTGGCAGCCCATTTGGTGGAGGTGGTGG
AAGCAGCAGAGGAAGAAGACAAAGAAGAGGAGAGGATGTTGTCCACCCTCTCAAAGTTTCTCTGGAGGATCTGTACAATGGAACATCAAA
GAAGCTTTCACTATCTCGCAATGTATTGTGCCCGAAGTGCAAGGGGAAAGGATCTAAATCAGGTGCTTCAATGAAGTGTTCTGGCTGTCA
AGGGTCTGGAATGAAAGTCACTATTAGACAACTTGGCCCATCCATGATCCAGCAGATGCAGCACCCTTGCAACGAGTGTAAGGGTACTGG
TGAGATGATCAATGATAAAGATAGGTGTGGGCAGTGTAAAGGTGAGAAGGTTGTGCAGGAGAAGAAGGTGTTGGAAGTTGTTGTCGAGAA
GGGTATGCAGAATGGACAGAAGATCACATTCCCGGGCGAGGCTGATGAAGCACCTGATACCGTCACTGGGGACATAGTTTTTGTCTTGCA
ACAGAAGGAACATCCCAAGTTTAAGCGGAAGGGAGATGATCTCTTTGTAGAGCACACCTTGAGCTTAACCGAGGCCCTGTGTGGTTTCCA
GTTCATCTTGACTCACCTAGATACCAGGCAGCTGATCATCAAGTCCCAACCCGGAGAAGTTGTCAAACCTGATCAATTTAAGGCCATAAA
TGATGAAGGAATGCCGATGTACCAAAGGCCATTTATGAGAGGAAAACTATACATTCACTTCACCGTAGAATTCCCCGACACATTATCCCT
CGAGCAATGCAAGAACCTTGAAGCAGTATTGCCACCAAAACCCAAAACCCAAATGACTGATATGGAATTGGACGAGTGCGAGGAGACCAC
GTTACATGATGTTAACATCGAAGAGGAGATGCGTAGGAAGCAGCAACAGGCCCAAGAGGCATACGACGAAGACGATGAAGACATGCATGG
TGGTGCACAGAGAGTTCAATGTGCACAACAGTAATTTGGTAACACGGAATTAACGTCACGATTCAACTCTTGTTTTCACGTATTTGTAAT
GACATTACTAGCTTATAAATTTCGAGTTTTGAATTTGCTAATCTATACTGTTAACGTTACAAACATATTATTGAAATATTTTGTCGAAGA
ATTGATATAAAGAGGAAATAAATTGGTGTGCTTTGTCTTGTG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc05g055160	Solyc05g055160

Genomic locations (0)

None

Library representation (40)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	38
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	9
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	3
Solanum lycopersicum	LeWCAD	Seedling Two-week-old seedings	227	1
Solanum lycopersicum	Sl_RootGC02	root Developing giant cell	141	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	14
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	12
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	15
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	8
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	10
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	10
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	13
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (217)

Alignment image suppressed for unigene with 217 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (6)

Unigene	Build
SGN-U312625	Tomato 200607 #1
SGN-U312628	Tomato 200607 #1
SGN-U333761	Tomato 200607 #1
SGN-U333765	Tomato 200607 #1
SGN-U333766	Tomato 200607 #1
SGN-U333773	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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