Sol Genomics Network

Unigene SGN-U578438

Unigene Basic Information

Unigene ID:	SGN-U578438
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1531 bp

>SGN-U578438 Tomato 200607 #2 (819 members)
GCTACTCAGAGAATAAGAAAAACCAGAGAAAATATAGAAGCAGAGTTCACTTCAATGAGTTTTCGAAAAGATGAATCTAATGGTTCCACA
AATCCAGATGACGATAATAACATCAAGCGGACTCAACTTAAAATTCAATTTCACGCTACAACAAAAGAGGATCTCGAAAACATCGAATCC
TATGTGAACAAATTGAAAACAATAGCCAATTCTCTAGCAGAAATCAACAGTCCCATCTCAGATTCAGATATGGTATTGCAACTTCTTGCT
GGTTTGCCAATTCAATATTTACCCATCAAAAACACAATATCATCAAAGTGGCCTCTTCCAAATTTTGAAGACGCTTGTTCCTTGGTCTAC
ATGCAAGAAGACATATTACTAAAGTCACAGGATGAAGAGAAGCAGTCGTCTAGTTTTATCAGCGGAGAGAATTTTGATGCTGCGGTAAAT
GCAATTGGATCACTTAGTACTGTTGTTGGCGCAGTGGGTGTTGTGGCTTCGGCTGGCTGGAAAATTTGGCAGGCGATAGCACGCAAGTAA
ATTATTATTATTACATGTAATTAAAAGTCGACGTTTAGACGTGCAATTTTATTTGGAGATTTGAAATTATTAGTATGATACTAATATGGA
TAGAGTTTATGTAATTGGATCTTCGGTTTTCTGTAATCAAAGTTAGAGATGCTATCAAGTATTTCTTTCCGTTTAGATTTAGAGGGTGTT
TGTATTAACTTAAAAATTGTCAACAATGGCTTCCTCTATAGTTTCTTCAGCTGCTGTTGCCACCCGCGGCAATGGTGCACAAGCTAGCAT
GGTTGCACCCTTCACTGGACTCAAGTCCACTGCTTCTTTCCCTGTTTCAAGGAAGCAAAACCTTGACATTACCTCCATTGCTAGCAACGG
TGGAAGAGTCAGTTGCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTACGAGACTCTGTCGTACCTTCCTGATTTGTCCGACGAGCA
ATTGCTCAGCGAAATTGAGTACCTATTGAAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTGAGCACGGATTTGTGTACCGTGAGAA
CCATAAGTCACCAGGATACTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCATGTTTGGGTGCACTGATGCAACCCAGGTCTTGGC
TGAGGTGCAGGAGGCAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAAGTGCAGTGCATCAGTTT
CATCGCTTACAAGCCCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATTTAGGGGAAGCTTGTTTG
AATCCTCCTTAAAGTTTTTCTCTGGAGAAACTGTAGTAATTTTACTTTGTTGTGTTCCCTTCATCTTTTGAATTAATGGCATTTGTTTTA
ATACTAATCTGCTTCTGAAACTTGTAATGTATGTATATCAGTTTCTTATAATTTATCCAAGTAATATCTTCCATTCTCTATGCAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TOMADPGPPS	ADP-glucose pyrophosphorylase small subunit

Genomic locations (0)

None

Library representation (34)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	35
Solanum lycopersicum	LC	Leaf Mature leaves	5712	26
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	42
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	5
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	1
Solanum lycopersicum	Sl_LeafWT01	leaf 1.5-month old plants	106	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	55
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	71
Solanum lycopersicum	cLER	leaf 4 weeks	5127	135
Solanum lycopersicum	cLES	leaf 4 weeks	5243	90
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	222
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	27
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	12
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	50
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (819)

Alignment image suppressed for unigene with 819 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (36)

Annotations (manual: 7 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (7)

Unigene	Build
SGN-U314081	Tomato 200607 #1
SGN-U314244	Tomato 200607 #1
SGN-U314694	Tomato 200607 #1
SGN-U314706	Tomato 200607 #1
SGN-U314708	Tomato 200607 #1
SGN-U338490	Tomato 200607 #1
SGN-U338497	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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