Sol Genomics Network

Unigene SGN-U580022

Unigene Basic Information

Unigene ID:	SGN-U580022
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1445 bp

>SGN-U580022 Tomato 200607 #2 (373 members)
CGGCCGGGGGTAGATTGAACACACAAGATAATACTCAGGAGTTGAGGAGAGAAAGATAAGGAAAGTAAGAAAATGGCATCAGCATCTCTC
CTCAAGACATCTCCGGTCCTTGACAAAACTGAGTTTGTAAAAGGCCAATCCCTACGCCTTCCATCCGTCTCCGTCCGCTGTCAACCATCT
GCACTCACTGTTCGTGCTAGCTCCTATGCTGATGAGCTCGTCAAAACCGCGAAAACTATTGCATCCCCTGGTCGTGGAATTTTGGCCATG
GATGAGTCCAATGCTACCTGTGGGAAGCGTTTAGCTTCAATCGGAATGGAGAACACTGAGGCTAACCGCCAGGCGTTCAGGACCCTGCTA
GTTTCAGTTCCTGGACTAGGGGAGTACATCTCTGGTGCAATCCTCTTTGAGGAGACACTTTATCAATCAACCGTCGAGGGAAAGAAAATG
GTTGATGTGCTTGTTGAGCAGAACATTGTTCCTGGTATTAAGGTTGACAAGGGTCTTGTTCCTTTGGCTGGCTCAAACAATGAATCATGG
TGCCAAGGTCTTGATGGCCTTGCCTCTCGCTCTGCTGCTTACTACCAACAAGGCGCCCGGTTTGCCAAATGGCGTACTGTTGTGAGCATC
CCTAATGGTCCTTCAGCACTTGCAGTGAAGGAAGCAGCCTGGGGTCTTGCTCGCTACGCTGCTATTTCTCAGGACAATGGGTTGGTACCC
ATCGTTGAGCCAGAGATCTTACTTGATGGTGAACACAACATTGATAGGACCTTTGAAGTCGCCAAGCAGGTGTGGGCTGAAGTTTTCTTC
TACCTTGCCCAGAACAATGTCATGTTTGAAGGTATCTTGTTGAAGCCCAGCATGGTCACCCCTGGAGCTGAGTGCAAGGACAGGGCCACC
CCACAGCAAGTTGCTGACTACACCCTCAGTCTCCTCCGCCAAAGAATCCCTCCTGCCGTCCCAGGAATCATGTTTTTGTCTGGTGGACAA
TCTGAAGTTGAGGCAACTCTTAACTTGAACGCCATGAACCAAAGTCCCAACCCATGGCACGTGTCGTTCTCATACGCCAGAGCCCTTCAG
AACACATGCCTCAAGACTTGGAGTGGAAGGCCAGAAAATGTGAAGGCAGCTCAGGATGCCTTGCTTGTTAGAGCAAAGGCCAACTCTCTT
GCCCAGCTAGGGAAATACACCGGTGAAGGTGAGTCCGATGAGGCCAAGAAGGGAATGTTCGTGAAGGGATACGTCTATTAAGTGTCTACC
AAAATCTATAGATATTTGATGATGAAGCATGTAATGTAGCCAAATCAAACTGCATAAATGCTTATAGCTGCTCCTCAAGACTGTTTTGTT
CATATACCGTGTGCTTTTAGCAATTTATTACATCCATCCTTCTCTGTTGGTTTATGTTATAAAATATAATGGGCTTAAATTCTCCACCAA
GCTCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc02g084440	Fructose-bisphosphate aldolase	Fructose-bisphosphate aldolase

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	7
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	49
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	20
Solanum lycopersicum	LB	Leaf Mature leaves	3316	6
Solanum lycopersicum	LC	Leaf Mature leaves	5712	12
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	10
Solanum lycopersicum	LeMiToLf01	leaf	30679	26
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	5
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	1
Solanum lycopersicum	Sl_LeafWT01	leaf 1.5-month old plants	106	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	23
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	19
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	9
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	50
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	20
Solanum lycopersicum	cLES	leaf 4 weeks	5243	15
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	23
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	11
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	11
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	3
Solanum lycopersicum	vSlycmRNA		8362	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6

mRNA member sequences (373)

Alignment image suppressed for unigene with 373 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (8)

Annotations (manual: 8 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (4)

Unigene	Build
SGN-U312609	Tomato 200607 #1
SGN-U333734	Tomato 200607 #1
SGN-U333736	Tomato 200607 #1
SGN-U333740	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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