Sol Genomics Network

Unigene SGN-U580418

Unigene Basic Information

Unigene ID:	SGN-U580418
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1773 bp

>SGN-U580418 Tomato 200607 #2 (320 members)
GAATTACTTTTGCTGTTATTTCTCCTCAGCTGTGCCGCATATCGCCTAATTTTTCTTCTCTAAGTTTCTTAGTGTCTCAAGATGGGTAAA
GAGAAGATTCACATCAGCATCGTGGTCATTGGTCATGTTGACTCTGGAAAGTCGACTACCACTGGTCACTTGATCTACAAGCTTGGTGGT
ATTGACAAGCGTGTTATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAACTT
AAGGCAGAACGTGAGCGTGGTATCACCATTGATATTGCTTTGTGGAAGTTTGAGACCACTAAGTACTACTGCACTGTTATTGATGCCCCC
GGCCACAGGGATTTCATCAAGAACATGATCACTGGTACCTCTCAGGCTGACTGTGCTGTTCTCATTATTGACTCCACTACTGGTGGTTTT
GAAGCTGGTATCTCCAAAGATGGTCAGACCCGTGAACATGCATTGCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAAC
AAGATGGATGCTACCACCCCCAAGTACTCCAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGTTAC
AACCCTGACAAAATCCCCTTTGTTCCAATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCTACCAACCTCGACTGGTACAAGGGA
CCAACCCTCCTTGAGGCTCTTGACCAGATTAATGAGCCCAAGAGGCCATCAGACAAGCCCCTCCGTCTTCCACTTCAGGACGTTTACAAG
ATTGGTGGAATTGGAACTGTCCCCGTTGGTCGTGTTGAAACTGGTGTGATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTACTGGTTTG
ACAACTGAAGTCAAGTCTGTAGAGATGCACCACGAAGCTCTCCAGGAGGCACTCCCTGGTGACAATGTTGGGTTCAATGTTAAGAATGTT
GCTGTTAAGGATCTTAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGGGGCAGCCAGCTTCACTGCCCAGGTCATC
ATCATGAACCATCCTGGCCAGATTGGAAACGGATATGCCCCTGTGCTCGACTGTCACACTTCACACATTGCTGTCAAGTTTGCTGAGATC
TTGACCAAGATTGACAGGCGTTCAGGTAAGGAACTTGAGAAGGAGCCTAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGATT
CCCACCAAGCCCATGGTTGTTGAGACCTTTGCTGAATACCCTCCATTGGGTCGTTTTGCTGTGAGGGACATGAGGCAGACTGTTGCTGTC
GGTGTTGTCAAGAATGTTGACAAGAAGGACCCAACTGGTGCCAAGGTGACCAAGGCTGCCCAGAAGAAGGGGAAGTGAACTGTGCAGTGT
GATGCTGGTGTTTCGAATGCTATTTATTTACATCGAGTGTGCTATCTAGACTCTGTTTTATTTAATTCTGCTTTAGTTTGGTCTTTGAGT
TGTGTATTAGGTTGTAGTTCTCTGACTTGTATCTCAAGTATCCATTCTCAGAACTGGGTACTTGATAGGCGGTGGCGAGCATGATTTTGA
GTCTGTTATCATTTGCTTTTGTTGAGGTGCCTTGGTTTGTTTTCCATGGTGGCTCAGGATTTTTGTTGCTTTAATTTGAGATTTAAGTTT
TCTACTCATTACGTTACATTTAAGTTAACATGTTACCTTTGCTAAAGGGTGGTGATTTGGTTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X14449	elongation factor 1-alpha

Genomic locations (0)

None

Library representation (43)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	17
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	32
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	2
Solanum lycopersicum	LePS	root 5 weeks old plants	823	2
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	2
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	1
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	34
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	12
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	33
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	24
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	8
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	11
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	8
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	6
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	15
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	6
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	9
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	4
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	13
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1