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Unigene SGN-U621106

Unigene Basic Information

Unigene ID:	SGN-U621106
Unigene Build:	Coffea canephora #3
Date:	2010-04-15
Organism:	C.canephora
Alternative ID:	none
mRNA sequence:	Length: 297 bp

>SGN-U621106 Coffea canephora #3 (1 members)
GAATATGGACCTGTTTCACCAAGAGCCCCACCGGCGAGTAAAGAAGTGGTGGGAAAGCTCCCAGTTACTGCTGTTATCGGCTATGTCTTG
ACCATCCTGGGTGCGGATAGTGAGTGCGCCATTTGCACTGAGAGCTTGGTGCTGAATGACAAGATGCAAGAGTTGCCTTGCAAGCATATC
TTTCACCCTCCCTGCCTTAAGCCCTGGCTGGATGAACATAATTCTTGTCCAATCTGTCGGCATGAGCTGCGAACGGATGATCATGACTAC
GAAAGTTGGAAGGAGCGAGAGAAGGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccwc22w	Whole Cherry 22 week after pollination	11656	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E676536
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255637845\|gb\|ACU19242.1\|	174	2e-42	79.38	291 bp (98.0%)	2
Description:	unknown [Glycine max]
arabidopsis	blastx	At5G20910.1	157	2e-39	75.27	279 bp (93.9%)	2
Description:	zinc finger (C3HC4-type RING finger) family protein \| chr5:7092665-7094312 REVERSE
swissprot	blastx	Q9CY62	85.9	7e-17	45.35	258 bp (86.9%)	2
Description:	E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P787417 (99 Aa)

EYGPVSPRAPPASKEVVGKLPVTAVIGYVLTILGADSECAICTESLVLNDKMQELPCKHIFHPPCLKPWLDEHNSCPICRHELRTDDHDY
ESWKEREKE

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P771782 (99 Aa)

EYGPVSPRAPPASKEVVGKLPVTAVIGYVLTILGADSECAICTESLVLNDKMQELPCKHIFHPPCLKPWLDEHNSCPICRHELRTDDHDY
ESWKEREKE

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U356118	Coffea canephora #2

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