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Unigene SGN-U640774

Unigene Basic Information

Unigene ID:	SGN-U640774
Unigene Build:	Coffee species #1
Date:	2010-04-19
Organism:	C.canephora C.arabica
Alternative ID:	none
mRNA sequence:	Length: 135 bp

>SGN-U640774 Coffee species #1 (1 members)
TCTTCACTTCTTATGATGAGGTTTCTGACAGTTTTGATTCAATGGTTTTTCTTGACACCCTTCTCAGGGGCATTTCTCCTTATGGTTTTG
ACAAGCCCTCTGCTATTCAACAAAGGGGAATTGTTCCTTTTTGCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccl	LeafB Young	11655	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E655862
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255635856\|gb\|ACU18275.1\|	73.9	6e-12	79.55	132 bp (97.8%)	1
Description:	unknown [Glycine max]
arabidopsis	blastx	At1G54270.1	71.2	1e-13	75	132 bp (97.8%)	1
Description:	Symbols: EIF4A-2 \| EIF4A-2 (eukaryotic translation initiation factor 4A-2); ATP-dependent heli…
swissprot	blastx	P41381	72.4	8e-13	77.27	132 bp (97.8%)	1
Description:	Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P807457 (46 Aa)

XFTSYDEVSDSFDSMVFLDTLLRGISPYGFDKPSAIQQRGIVPFCX

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P824803 (45 Aa)

SSLLMMRFLTVLIQWFFLTPFSGAFLLMVLTSPLLFNKGELFLFA

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (0)

None

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