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Unigene SGN-U642556

Unigene Basic Information

Unigene ID:	SGN-U642556
Unigene Build:	Coffee species #1
Date:	2010-04-19
Organism:	C.canephora C.arabica
Alternative ID:	none
mRNA sequence:	Length: 263 bp

>SGN-U642556 Coffee species #1 (1 members)
ATCATCAAATTCACTAGCCGAACGATTCACAACGCTTCATCGCCTTCTTATCCCGGCTCTCCCATCTCCGCCGCAAACCCGCAGTTGCCT
GTGCCCATTATGCTTGTCGGCAACAAGAGCGACCGAGTCACAGAGAGAGAAGTTTCAACACAAGAAGGCCATGCCCTCGCCCGCGAGCTT
GGCTGTGAGTTTGTGGAAGCTTCAGCCAAAAACTGTATCAATGTTGAAAAGGCGTTTTACGATGTTGTTAGGATTCTACGTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccp	Pericarp All development stages combined	10473	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|256732182\|gb\|EEU45531.1\|	153	7e-36	100	228 bp (86.7%)	2
Description:	predicted protein [Nectria haematococca mpVI 77-13-4]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	Q01387	122	9e-28	78.31	243 bp (92.4%)	2
Description:	Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P809073 (89 Aa)

XSSNSLAERFTTLHRLLIPAXPISAANPQLPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFVEASAKNCINVEKAFYDVVGFYVX

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P826754 (88 Aa)

IIKFTSRTIHNASSPSYPGSPISAANPQLPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFVEASAKNCINVEKAFYDVVRILRR

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (0)

None

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