Sol Genomics Network

Unigene SGN-U196116

Unigene Basic Information

Unigene ID:	SGN-U196116
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196116
mRNA sequence:	Length: 1738 bp

>SGN-U196116 Capsicum annuum #1 (56 members)
GGAGACTATAAAAAGCCCATTATCCTTCCAACATTAGCACTTCCTCACTTTTTCTGTGATTCCCTTCTCTCTGAGCCGCCGCAAAGTGAC
CTAATTCCTCTTCTCTCTAAGTCTTTTAGTCCCTCAAGATGGGTAAGGAAAAGATTCACATCAGCATTGTGGTCATTGGTCACGTCGACT
CTGGAAAGTCAACTACCACTGGTCACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTTATTGAGAGGTTCGAGAAGGAAGCTGCTG
AAATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACCATTGATATTGCTTTAT
GGAAGTTTGAGACCACTAAGTACTACTGCACTGTGATTGATGCCCCTGGACACAGGGACTTTATCAAGAACATGATCACTGGTACCTCAC
AGGCTGACTGTGCTGTCCTTATTATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCGAAAGATGGTCAGACCCGTGAACATGCAT
TGCTTGCTTTCACCCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCAACCACCCCCAAGTACTCCAAGGCTAGGTATG
ATGAAATCGTGAAGGAAGTGTCTTCCTACCTCAAGAAGGTCGGTTACAACCCTGACAAGATCCCCTTCGTCCCCATCTCTGGTTTTGAAG
GTGATAATATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGCCCAACCCTCCTTGAGGCTCTCGACCAGATTAATGAGCCCAAGA
GGCCATCAGACAAACCCCTCCGTCTTCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTAGAGACTG
GTGTGATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTTCTGGTTTGACAACTGAAGTTAAGTCCGTAGAGATGCACCACGAAGCTCTCC
AAGAGGCACTCCCTGGTGACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTTAAGCGTGGTTATGTTGCCTCAAACTCCA
AGGATGACCCAGCCAAGGGGGCTGCCAGCTTCACTGCCCAGGTCATCATCATGAACCATCCTGGACAGATTGGAAATGGATATGCCCCAG
TGCTCGACTGCCACACTTCCCACATTGCTGTCAAGTTTGCTGAGATTTTGACCAAGATCGACAGGCGTTCAGGTAAGGAACTCGAGAAGG
AGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCTATGGTGGTTGAAACCTTTGCTGAATATCCAC
CATTGGGTCGTTTTGCTGTTAGAGACATGAGGCAAACTGTTGCTGTTGGTGTTGTCAAGAATGTTGACAAGAAGGACCCAACTGGTGCCA
AGGTCACAAAGGCTGCCCAGAAGAAGGGAAAGTGAACAGTGCATTATAATGCTAGTGTTTCCAATGCTATCTTTTATCGTCAAGTGTGCT
ATCTAAACTATTTTATTTAATTATGTTATAGTTTGGTCTTTGATTTGCTTATTAGGTTCTAGTTCTCTGCCTTGTATGTCAGGTAACCAT
TCTCAGAACTGGGTACTTGATAGGCGGTGGCGAGCATATTTCGAGTCTCTTTTCATTTTCTGTTGAGGTGCCATGATGGCTTTGTATTTT
TGCTATTAATGTTAACTGAATTGCTTAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
AF242732	translation elongation factor 1a
AY490176	U-Lim

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	9
Capsicum annuum	KS07	Flower bud	4235	4
Capsicum annuum	KS08	Anther	2304	1
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	17
Capsicum annuum	KS10	Hairy root	2179	10
Capsicum annuum	KS11	Early root	2168	10
Capsicum annuum	KS12	Placenta	4279	5

mRNA member sequences (56)

Alignment image suppressed for unigene with 56 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22048	EFTU_Cterm	97
5	56339	EFTU_Cterm	71
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	128992	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	75

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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