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Unigene SGN-U199544

Unigene Basic Information

Unigene ID:	SGN-U199544
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199544
mRNA sequence:	Length: 239 bp

>SGN-U199544 Capsicum annuum #1 (1 members)
TTTTGCAGCCATGGACAAGGTTCAAGAGATAGTGGAAAAGCAAGTGTTGACGGTAGCTAAAGCCGTGGAAGACAAACTTGATGAAGAGAT
ATCAGCGTTAGATCGTCTAGATATTGATGATATTGAGGTATTGAGAGAGCGCAGATTGCAACAGATGAAGAAAATGGCTGACAAACAAAG
TCGATGGATCTCTCTTGGACACCGGCGAATACTCTGAGATCCCTAACGAAAAGGATTCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E512863
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15224267\|ref\|NP_179489.1\|	99.75	2.6e-21	75.41	183 bp (76.6%)	2
Description:	TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) [Arabidopsis thaliana] >gi5902677\|sp\|O6…
arabidopsis	blastx	At2g18990.1	99.75	6.5e-23	75.41	183 bp (76.6%)	2
Description:	At2g18990.1 68409.m02006 ATP binding protein -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34100 (80 Aa)

FAAMDKVQEIVEKQVLTVAKAVEDKLDEEISALDRLDIDDIEXIERAQIATDEENGXTNKVDGSLLDTGEYSEIPNEKDS

SignalP predicts non-secretion with a score of 0.022

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153554 (71 Aa)

FAAMDKVQEIVEKQVLTVAKAVEDKLDEEISALDRLDIDDIEVLRERRLQQMKKMADKQSRWISLGHRRIL

SignalP predicts non-secretion with a score of 0.02

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	899	Thioredoxin Thiored Thioredox_dom2	21
2	23191	Thioredoxin Thiored Thioredox_dom2	15
5	58585	Thioredoxin Thiored Thioredox_dom2	8
1.1	101384	Thioredoxin-like fold	404
2	119580	Thioredoxin fold Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin-like fold	14
5	131295	Thioredoxin fold Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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