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Unigene SGN-U200078

Unigene Basic Information

Unigene ID:	SGN-U200078
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200078
mRNA sequence:	Length: 226 bp

>SGN-U200078 Capsicum annuum #1 (1 members)
CTTAAGGGACACGGTTGCACGTTGCACCACTCAGGTGTACCCCAAGTCATGGACCGCAATATACATGGCATTAGACAATGTAGGAATGTG
GAACATAAGGTCTGAGAATTGGTCGAGGAGGTACTTGGGTCAGCAATTCTACTTAAGAGTTTACTCCCCAGCAAATTCTTGGAGAGATGA
ACTTCCAATACCAAAGAATGCTCTTCTTTGTGGCAAAGCTAGAGGT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498123
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34394659\|dbj\|BAC83966.1\|	132.5	1.5e-30	77.33	225 bp (99.6%)	2
Description:	gi\|34394659\|dbj\|BAC83966.1\| putative PS60 [Oryza sativa (japonica cultivar-group)]
arabidopsis	blastx	At4g22010.1	129.4	3.2e-31	74.67	225 bp (99.6%)	2
Description:	At4g22010.1 68411.m02912 pectinesterase (pectin methylesterase), putative similar to pectineste…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154103 (75 Aa)

LRDTVARCTTQVYPKSWTAIYMALDNVGMWNIRSENWSRRYLGQQFYLRVYSPANSWRDELPIPKNALLCGKARG

SignalP predicts non-secretion with a score of 0.117

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34625 (75 Aa)

LRDTVARCTTQVYPKSWTAIYMALDNVGMWNIRSENWSRRYLGQQFYLRVYSPANSWRDELPIPKNALLCGKARG

SignalP predicts non-secretion with a score of 0.117

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	69	Cu-oxidase CopA	171
2	22032	Cu-oxidase CopA	115
5	56295	Cu-oxidase CopA	109
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118466	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	111
5	128966	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	105

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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