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Unigene SGN-U200379

Unigene Basic Information

Unigene ID:	SGN-U200379
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200379
mRNA sequence:	Length: 246 bp

>SGN-U200379 Capsicum annuum #1 (1 members)
AGTGGATGCCATTCGAACAATACGCAGCTCAGCCATTTGTCCAAGGACATGATCTTCTCAAGTACATCGCTGACATATGCTCGGCGAAGA
TGGAGGGTAGGTATACAGGTTTCTCATCAGTTCCTACCGTAACCAGTTCTTCTGCGAAGAATACCTACTTGTACATGAATAGCAGTGTCA
GAACAGCCGGTGGCAACGACCCCTAATGTGAAACTTTTCGATTCTTCCCTCTACCAAAAGTTGAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E507989
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154413 (67 Aa)

WMPFEQYAAQPFVQGHDLLKYIADICSAKMEGRYTGFSSVPTVTSSSAKNTYLYMNSSVRTAGGNDP

SignalP predicts non-secretion with a score of 0.104

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34916 (67 Aa)

WMPFEQYAAQPFVQGHDLLKYIADICSAKMEGRYTGFSSVPTVTSSSAKNTYLYMNSSVRTAGGNDP

SignalP predicts non-secretion with a score of 0.104

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	423	NUDIX_hydrolase	41
2	22926	GFG_antis	18
5	57041	GFG_antis	18
1.1	101844	NUDIX hydrolase	33
2	119125	NUDIX hydrolase Anti-sense to fibroblast growth factor protein GFG	20
5	129596	NUDIX hydrolase Anti-sense to fibroblast growth factor protein GFG	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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