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Unigene SGN-U202690

Unigene Basic Information

Unigene ID:	SGN-U202690
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202690
mRNA sequence:	Length: 194 bp

>SGN-U202690 Capsicum annuum #1 (1 members)
AAAAGGTCGTCCCAAAGAAGAGGAAATGGCGCATACAGCAGCAATGGGCGTCTCCCAATTTTCGGCTTCAACATACATGCCCCAATCCCC
ACTCAAATTCCACAATCCAAAGCCGAAGAGAATCATCACAATAACTCATAAAAGATTCAATTTGGTTAAAGCTACCGTCGATGGCCCCTC
ACCACAAGGTTTTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E513260
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37146 (65 Aa)

KRSSQRRGNGAYSSNGRLPIFGFNIHAPIPTQIPQSKAEENHHNNSKRFNLVKATVDGPSPQGFX

SignalP predicts non-secretion with a score of 0.065

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P156773 (64 Aa)

KGRPKEEEMAHTAAMGVSQFSASTYMPQSPLKFHNPKPKRIITITHKRFNLVKATVDGPSPQGF

SignalP predicts non-secretion with a score of 0.062

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	878	NifU_C	21
2	38271		1
5	75869		1
1.1	102128	Nitrogen-fixing NifU C-terminal	21

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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