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Unigene SGN-U203867

Unigene Basic Information

Unigene ID:	SGN-U203867
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203867
mRNA sequence:	Length: 324 bp

>SGN-U203867 Capsicum annuum #1 (1 members)
GATGGATCTGAAGTCACGTGTAGATGGACCAGCCCAAGCTTATGTCGTCGAGGCAAGGGTTGATAGAGGACGGGGTCCATTGGCTACTGC
AATAGTGAAAGCAGGAACCCTTGTCTGTGGTCAGCATGTTGTTGTAGGTGCGGAGTGGGGAAAAATCAGGGCTATTAGGGATATGCTAGG
AAAATTGACTGATAGAGCTAGGCCAGCTATGCCCGTGGAGATTGAGGGACTCAAAGGGCTTCCAATGGCTGGTGATGACATTATTGTCGT
TCACTCTGAGAAAAGGGCAAGGATGCTTAGCGATGGGAGGAAAAAGAAACTTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508392
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At4g11160 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15237076\|ref\|NP_192854.1\|	183.7	5e-46	83.02	318 bp (98.1%)	2
Description:	gi\|15237076\|ref\|NP_192854.1\| translation initiation factor IF-2, putative [Arabidopsis thaliana…
arabidopsis	blastx	At4g11160.1	183.7	1.3e-47	83.02	318 bp (98.1%)	2
Description:	At4g11160.1 68411.m01635 translation initiation factor IF-2, putative translation initiation fa…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006413 translational initiation
GO:0005622 intracellular
GO:0005525 GTP binding
GO:0003743 translation initiation factor activity

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38286 (108 Aa)

MDLKSRVDGPAQAYVVEARVDRGRGPLATAIVKAGTLVCGQHVVVGAEWGKIRAIRDMLGKLTDRARPAMPVEIEGLKGLPMAGDDIIVV
HSEKRARMLSDGRKKKLX

SignalP predicts non-secretion with a score of 0.056

IPR000178 Initiation factor 2
IPR004161 Elongation factor Tu, domain 2

Prediction based on longest six frame method

>SGN-P157976 (107 Aa)

MDLKSRVDGPAQAYVVEARVDRGRGPLATAIVKAGTLVCGQHVVVGAEWGKIRAIRDMLGKLTDRARPAMPVEIEGLKGLPMAGDDIIVV
HSEKRARMLSDGRKKKL

SignalP predicts non-secretion with a score of 0.056

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	25109	EFTU_D2 Cons_hypothATPbd Small_GTP Ras_trnsfrmng LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TIF_aIF-2 TEF_SelB IF2_N EF-Tu ArgK	7
5	61342	EFTU_D2 Cons_hypothATPbd Small_GTP Alpha_E2_glycop Ras_trnsfrmng LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TIF_aIF-2 TEF_SelB IF2_N EF-Tu ArgK	4
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	120922	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412) Initiation factor 2 - Molecular Function: translation initiation factor activity (GO:0003743) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational initiation (GO:0006413)	7
5	133792	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412) Initiation factor 2 - Molecular Function: translation initiation factor activity (GO:0003743) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational initiation (GO:0006413)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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