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Unigene SGN-U204003

Unigene Basic Information

Unigene ID:	SGN-U204003
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204003
mRNA sequence:	Length: 293 bp

>SGN-U204003 Capsicum annuum #1 (1 members)
GAACAGGACGGTAGAAGGCGATATGACCTCCGCAATCGAGCTGAGGTACGCAGGCTTTCTATGGAAGGAGTTAAACAAAGGCCAAGGTCT
CCTCGTAGGGTACTTCAGCAAGGGATGGGGACCAAGGTGAACAGAGATGTAAGAAGAGGAGGATCCCGAGTTCATAAACGTCATCGGCTG
ACACGAGGTGATGACTCTGATGATTCTCTTCTTGTAGATGAGCTGGACCAAGGTCCTCCAATTCCTTGGGGTAGAGGTGGGAGCAGATCT
GGACCACCTTGGCTTTTTGGGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E490700
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25406882\|pir\|\|B86194	93.59	7e-19	71.88	186 bp (63.5%)	1
Description:	gi\|25406882\|pir\|\|B86194 hypothetical protein [imported] - Arabidopsis thaliana gi\|6850321\|gb\|AA…
arabidopsis	blastx	At1g05910.1	93.59	1.8e-20	71.88	186 bp (63.5%)	1
Description:	At1g05910.1 68408.m00563 tat-binding protein -related similar to GB:CAA56963 from [Saccharomyce…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P158117 (98 Aa)

EQDGRRRYDLRNRAEVRRLSMEGVKQRPRSPRRVLQQGMGTKVNRDVRRGGSRVHKRHRLTRGDDSDDSLLVDELDQGPPIPWGRGGSRS
GPPWLFGG

SignalP predicts non-secretion with a score of 0.036

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38420 (98 Aa)

EQDGRRRYDLRNRAEVRRLSMEGVKQRPRSPRRVLQQGMGTKVNRDVRRGGSRVHKRHRLTRGDDSDDSLLVDELDQGPPIPWGRGGSRS
GPPWLFGG

SignalP predicts non-secretion with a score of 0.036

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	15	AAA_ATPase_centr	420
2	38621		1
5	76326		1
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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