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Unigene SGN-U204254

Unigene Basic Information

Unigene ID:	SGN-U204254
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204254
mRNA sequence:	Length: 168 bp

>SGN-U204254 Capsicum annuum #1 (1 members)
CCGTCTTCTGTAACCAGCGGCGAACTGAACAGGCAACTAGGAGTGATCACGATGGGACTTCTCAGCATTATTCGAAAGATAAAGCAAAAA
GAAAAGGAAATGCGCATCCTTATGGTGGGTCTTGACAACTCTGGTAAGACAACAATAGTTTTAAAAATAAACGATGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511384
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15224165\|ref\|NP_179430.1\|	72.4	2e-12	94.87	117 bp (69.6%)	1
Description:	TTN5 (TITAN 5); GTP binding / GTPase [Arabidopsis thaliana] >gi11131460\|sp\|Q9ZPX1.1\|ARF5_ARATH …
arabidopsis	blastx	At2g18390.1	72.4	4.8e-14	94.87	117 bp (69.6%)	1
Description:	At2g18390.1 68409.m01934 ADP-ribosylation factor-like protein 2 (ARL2) identical to ARL2 G-prot…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on longest six frame method

>SGN-P158379 (56 Aa)

SSFIFKTIVVLPELSRPTIRMRISFSFCFIFRIMLRSPIVITPSCLFSSPLVTEDG

SignalP predicts non-secretion with a score of 0.294

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38663 (56 Aa)

PSSVTSGELNRQLGVITMGLLSIIRKIKQKEKEMRILMVGLDNSGKTTIVLKINDE

SignalP predicts non-secretion with a score of 0.12

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158378 (56 Aa)

PSSVTSGELNRQLGVITMGLLSIIRKIKQKEKEMRILMVGLDNSGKTTIVLKINDE

SignalP predicts non-secretion with a score of 0.12

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	22020	ARF/SAR	137
5	64682		2
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	120988	TAFII55 protein conserved region - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	7
5	137991		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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