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Unigene SGN-U204282

Unigene Basic Information

Unigene ID:	SGN-U204282
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204282
mRNA sequence:	Length: 325 bp

>SGN-U204282 Capsicum annuum #1 (1 members)
CATGTCCGGCGGTTTTTTCCGGGGCACTTCTGCCGAGCAGGACACTCGGTTCTCTAATAAGCAAGCTAAGCTGTTGAAATCTCAGAAGTT
CGCTCCTGAATTGGAAAATCTGGTGGACATGACAAAGGTGAAGATGGATGTAATGAAACCATGGATTGCTAACCGAGTTACCGAGCTTAT
CGGCTTTGAAGATGAAGTGCTTATCAATTTCATTTATACTCTTCTTGAACGAAAGGTTGTTAATGGCAAGGAGGTTCAAATTTCACTTAC
AGGATTCATGGAAAGAAACACTGGCAAATTTATGAAAGAGCTTTGGGTGCTACTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E502854
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At2g29210 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30684163\|ref\|NP_180484.2\|	197.2	4.3e-50	88.89	324 bp (99.7%)	2
Description:	splicing factor PWI domain-containing protein [Arabidopsis thaliana] >gi21928131\|gb\|AAM78093.1\|…
arabidopsis	blastx	At2g29210.1	197.2	1.1e-51	88.89	324 bp (99.7%)	2
Description:	At2g29210.1 68409.m03214 proline-rich protein -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006397 mRNA processing

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P158407 (108 Aa)

MSGGFFRGTSAEQDTRFSNKQAKLLKSQKFAPELENLVDMTKVKMDVMKPWIANRVTELIGFEDEVLINFIYTLLERKVVNGKEVQISLT
GFMERNTGKFMKELWVLL

SignalP predicts non-secretion with a score of 0.04

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38690 (108 Aa)

MSGGFFRGTSAEQDTRFSNKQAKLLKSQKFAPELENLVDMTKVKMDVMKPWIANRVTELIGFEDEVLINFIYTLLERKVVNGKEVQISLT
GFMERNTGKFMKELWVLL

SignalP predicts non-secretion with a score of 0.04

IPR002483 Splicing factor PWI

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2056	Extensin_2 PWI	9
2	27247	Extensin_2 Ribosomal_L41 PWI	4
5	61356	Extensin_2 Ribosomal_L41 PWI	4
1.1	101387	NOSIC PWWP	377
2	120689	Splicing factor PWI - Biological Process: mRNA processing (GO:0006397)	8
5	131327	Splicing factor PWI - Biological Process: mRNA processing (GO:0006397)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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