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Unigene SGN-U204523

Unigene Basic Information

Unigene ID:	SGN-U204523
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204523
mRNA sequence:	Length: 239 bp

>SGN-U204523 Capsicum annuum #1 (1 members)
CTCCACTCTTTCTTTCGTACGGCTTCCATTTCACAGAGAGTGTGTTTATTCCCCACCACTTGTATTATCCATTCATTCGTCGATTCTTCC
AAAAGGATGTCCAGCGCGTGCGGTGATGAATCATCGGCGAGGGAAGTTACCGGCGCCGGTGAAATCATGTTGTTTGGCGTGAGAGTGAAA
GTCGATCCTATGAGGAAGAGCGTCAGTCTCAACAATCTCTCACAGTACGAACAGCCGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505377
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38926 (79 Aa)

PLFLSYGFHFTESVFIPHHLYYPFIRRFFQKDVQRGGDESSAREVTGAGEIMLFGVRVKVDPMRKSVSLNNLSQYEQPX

SignalP predicts non-secretion with a score of 0.269

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158652 (79 Aa)

LHSFFRTASISQRVCLFPTTCIIHSFVDSSKRMSSACGDESSAREVTGAGEIMLFGVRVKVDPMRKSVSLNNLSQYEQP

SignalP predicts non-secretion with a score of 0.351

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158653 (79 Aa)

FGCSYCERLLRLTLFLIGSTFTLTPNNMISPAPVTSLADDSSPHALDILLEESTNEWIIQVVGNKHTLCEMEAVRKKEW

SignalP predicts secretion with a score of 0.679

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	111	Myb_DNA_binding	121
2	22066	Myb_DNA_binding	83
5	76508		1
1.1	101455	Homeodomain-like	138
2	118493	Homeodomain-like	82

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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