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Unigene SGN-U204682

Unigene Basic Information

Unigene ID:	SGN-U204682
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204682
mRNA sequence:	Length: 248 bp

>SGN-U204682 Capsicum annuum #1 (1 members)
CAGACATGAATCGGCTTTTTGTGCTGTTGGTCAGCTAATTGCAGTTTTACGTCTTGGTGGAAGAGGGGCTAGGTATAGTGCTGGCAAAGC
CTTGGAGAACCTGTTCTCAGCAGATCACATCAGGAATGCAGAATCAGCTAAACAGTCTGTGCAGCCTTTGGTTGAGATTCTGAATAATGG
TCTGGAGAGGGAGCAGCATGCAGCCATTGGTGCATTAGTTAGGCTTCTCAGTGAAAATCCTTCAAAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E510833
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25412087\|pir\|\|C84609	134	5e-31	81.71	246 bp (99.2%)	2
Description:	hypothetical protein At2g22130 [imported] - Arabidopsis thaliana
arabidopsis	blastx	At1g77460.1	82.42	4.3e-17	54.32	243 bp (98.0%)	2
Description:	At1g77460.1 68408.m08279 C2 domain/armadillo repeat-containing protein similar to CCLS 65 [Sile…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39080 (83 Aa)

RHESAFCAVGQLIAVLRLGGRGARYSAGKALENLFSADHIRNAESAKQSVQPLVEILNNGLEREQHAAIGALVRLLSENPSKX

SignalP predicts non-secretion with a score of 0.378

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158816 (82 Aa)

RHESAFCAVGQLIAVLRLGGRGARYSAGKALENLFSADHIRNAESAKQSVQPLVEILNNGLEREQHAAIGALVRLLSENPSK

SignalP predicts non-secretion with a score of 0.378

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	21	Armadillo	362
2	38795		1
5	76558		1
1.1	101373	Armadillo-like helical - Molecular Function: binding (GO:0005488)	564
2	119394	Armadillo-like helical - Molecular Function: binding (GO:0005488) C2 Armadillo HEAT	16
5	129892	Armadillo-like helical - Molecular Function: binding (GO:0005488) C2 Armadillo HEAT	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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