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Unigene SGN-U206322

Unigene Basic Information

Unigene ID:	SGN-U206322
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206322
mRNA sequence:	Length: 207 bp

>SGN-U206322 Solanum melongena #2 (1 members)
TTATCTTGCAATCTGAAATCTAAGTTCACTCCTCCTGCAGGAAACAAGGAATTGACAAGGAAATTAGCAATTGTACCTATTAGAGCACAG
ACAGCTGTTACCACTCCTGCAGTCACCCAGTCTACTTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATTACTGGAGCCTCC
TCTGGTTTAGGACTAGCTACAGCAAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E519782
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21068895\|dbj\|BAB93004.1\|	83.96	6.2e-16	82.86	207 bp (100.0%)	1
Description:	NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P29907 (69 Aa)

LSCNLKSKFTPPAGNKELTRKLAIVPIRAQTAVTTPAVTQSTSGQKKTLRKGNVIITGASSGLGLATAK

SignalP predicts non-secretion with a score of 0.103

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P208736 (69 Aa)

LSCNLKSKFTPPAGNKELTRKLAIVPIRAQTAVTTPAVTQSTSGQKKTLRKGNVIITGASSGLGLATAK

SignalP predicts non-secretion with a score of 0.103

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	17	Adh_short_C2	380
2	22706	ADH_short Prochl_reduct Adh_short_C2	21
5	56903	ADH_short Prochl_reduct Adh_short_C2	20
1.1	101390	Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	342
2	119148	Short-chain dehydrogenase/reductase SDR - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Light-dependent protochlorophyllide reductase - Cellular Component: chloroplast (GO:0009507) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: protochlorophyllide reductase activity (GO:0016630) - Biological Process: photosynthesis dark reaction (GO:0019685) Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	19
5	129561	Short-chain dehydrogenase/reductase SDR - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Light-dependent protochlorophyllide reductase - Cellular Component: chloroplast (GO:0009507) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: protochlorophyllide reductase activity (GO:0016630) - Biological Process: photosynthesis dark reaction (GO:0019685) Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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