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Unigene SGN-U206689

Unigene Basic Information

Unigene ID:	SGN-U206689
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206689
mRNA sequence:	Length: 162 bp

>SGN-U206689 Solanum melongena #2 (1 members)
TGCATCAGATGGTGGATCTCAGCTTATTGTCCCTGCTGGTCAATGGCTCACTGGGCGCTTCAATCTTTCTAGCCATTTCACTCTTTTCCT
TCATAAGGATGCTGTTCTTCTTGCTTCTCAGGAAATAAATGAATGGGCTGTTATTGACCCATTACCATCATA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E516071
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30692538\|gb\|AAP33475.1\|	87.43	5.9e-17	71.7	159 bp (98.1%)	2
Description:	polygalacturonase-like protein [Fragaria x ananassa]
arabidopsis	blastx	At3g61490.1	84.73	9.4e-18	67.92	159 bp (98.1%)	2
Description:	At3g61490.1 68410.m06362 polygalacturonase, putative polygalacturonase - Zea mays, EMBL:ZMPGAL3
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209121 (53 Aa)

ASDGGSQLIVPAGQWLTGRFNLSSHFTLFLHKDAVLLASQEINEWAVIDPLPS

SignalP predicts non-secretion with a score of 0.184

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30251 (54 Aa)

ASDGGSQLIVPAGQWLTGRFNLSSHFTLFLHKDAVLLASQEINEWAVIDPLPSX

SignalP predicts non-secretion with a score of 0.185

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	76	Glyco_hydro_28	160
2	22117	Glyco_hydro_28	61
5	56366	Glyco_hydro_28	58
1.1	101443	Virulence factor pectin lyase fold Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975)	154
2	118567	Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975) Pectolytic enzyme Pectin lyase fold Virulence factor pectin lyase fold	52
5	129061	Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975) Pectolytic enzyme Pectin lyase fold Virulence factor pectin lyase fold	50

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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